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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TATAAATGAATGGCGCTGTGGTTTCTGCAAGAAAGCCTTCCGAGCAGAGAAGTTCCTTGATCAGCATTTTCACAATCGGCACAATAATCTTGTGGATAATgtatgattcttaccgatttgcatgagactttcaatcatccgttccataaatcacttgtactagtttcatatctgctttctttctttgatagtattggtgt...

Basic information

species Oryza sativa
transcript LOC_Os12g13130.2
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os12g13130.4 (Oryza sativa), 5'ss of exon 5
lower sequence: GRMZM2G095323_T03 (Zea mays), 5'ss of exon 4
TATAAATGAATGGCGCTGTGGTTTCTGCAAGAAAGCCTTCCGAGCAGAGAAGTTCCTTGATCAGCATTTTCACAATCGGCACAATAATCTTGTGGATAATgtatgatt-cttaccgatttgcatgagactttcaatcatccgttcc-ataaatcacttg-tactagtttcatatctgctttctttctttgatagtattggtgt
||| ||||| |||| |||||| || ||||||||||| |||||||||||||||||| |||||||||||||| | ||||| ||||| |||||||||||||||||||| || | || |  |    ||    ||||     || | | |  || |   | ||| || || ||  || | |  |  |   || |       ||  |  
TATTAATGAGTGGCACTGTGGCTTTTGCAAGAAAGCTTTCCGAGCAGAGAAGTTCATTGATCAGCATTTTGAAAATCGCCACAAGAATCTTGTGGATAATgtatgcttacataacagtgattatatttctttagtatatgcttacttatcatgaatttgatattatttgtat-tgtaatcacaagctataccttctttcat--

upper sequence: LOC_Os12g13130.4 (Oryza sativa), 5'ss of exon 5
lower sequence: Vv17s0000g10170.t01 (Vitis vinifera), 5'ss of exon 4
TATAAATGAATGGCGCTGTGGTTTCTGCAAGAAAGCCTTCCGAGCAGAGAAGTTCCTTGATCAGCATTTTCACAATCGGCACAATAATCTTGTGGATAATgtatg--attcttaccgatttgcatgagactttca-atcatccgttccataaatcacttgtactagtttcatatct-gctttctttctttgatagtattggtgt
||||||||||||||||||||| | ||||||||||  |||||| |||||||| || |||||||| |||||| ||||  | ||| ||  |||| || ||  ||||||   | | |      |||         |||| | |||  |||    |  ||| |   | |  |   || | |    || | | ||| ||  |||      
TATAAATGAATGGCGCTGTGGATACTGCAAGAAAAGCTTCCGTGCAGAGAAATTTCTTGATCAACATTTTGACAACAGACACTATGGTCTTCTGAATGTTgtatgtggtccctggttccttgtccattttgttcataccattagttgtcaagttcaatctgaatgctcaaatttatcaaattgtctatttcattttatgt----
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|218496856|gb|FG966014.1|FG966014
EST:     AGTTCCTTGATCAGCATTTTCACAATCGGCACAATAATCTTGTGGATAAT                         AGTCAAGGAAGATGCTTGGCTGATCTATGTGGAG
genomic: AGTTCCTTGATCAGCATTTTCACAATCGGCACAATAATCTTGTGGATAATgtatgattct ... tctcctttagAGTCAAGGAAGATGCTTGGCTGATCTATGTGGAG
EST: gi|29645805|gb|CB650812.1|CB650812
EST:     AGTTCCTTGATCAGCATTTTCACAATCGGCACAATAATCTTGTGGATAAT                         AGTCAAGGAAGATGCTTGGCTGATCTATGTGGAGCACTTCACTGTGATCTG
genomic: AGTTCCTTGATCAGCATTTTCACAATCGGCACAATAATCTTGTGGATAATgtatgattct ... tctcctttagAGTCAAGGAAGATGCTTGGCTGATCTATGTGGAGCACTTCACTGTGATCTG
EST: gi|29645769|gb|CB650776.1|CB650776
EST:     AGTTCCTTGATCAGCATTTTCACAATCGGCACAATAATCTTGTGGATAAT                         AGTCAAGGAAGATGCTTGGCTGATCTATGTGGAGCACTTCACTGTGATCTG
genomic: AGTTCCTTGATCAGCATTTTCACAATCGGCACAATAATCTTGTGGATAATgtatgattct ... tctcctttagAGTCAAGGAAGATGCTTGGCTGATCTATGTGGAGCACTTCACTGTGATCTG
EST: gi|58674107|gb|CK062793.1|CK062793
EST:     AGTTCCTTGATCAGCATTTTCACAATCGGCACAATAATCTTGTGGATAAT                         AGTCAAGGAAGATGCTTGGCTGATCTATGTGGAGCACTTCAC
genomic: AGTTCCTTGATCAGCATTTTCACAATCGGCACAATAATCTTGTGGATAATgtatgattct ... tctcctttagAGTCAAGGAAGATGCTTGGCTGATCTATGTGGAGCACTTCAC