1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' | 20 5' 3' |
21 5' 3' | 22 5' 3' |
CTACAAATGGATGACATATGGAGAAGCTAGTACAAGCCGGACTGCGATAGGTTCTGGTCTTATTTACCATGGAATACCTGAAgtgagtcattatgatctcaacaagcaccgtccttctgattttaactactaacaggcagatcttgtcacacattgccataatgatatagcatttgtggttacacttacagattcctttttttaaacttgcattaaataattttctaaaactgaaccag
species | Oryza sativa |
transcript | LOC_Os12g04990.2 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: CAAGCCGGACTGCGATAGGTTCTGGTCTTATTTACCATGGAATACCTGAA GGTGCGCGCATTGGTTTGTATTTTATAAACAGACCTGAGTGGACCATAGTTEST: gi|29667939|gb|CB664214.1|CB664214
genomic: CAAGCCGGACTGCGATAGGTTCTGGTCTTATTTACCATGGAATACCTGAAgtgagtcatt ... actgaaccagGGTGCGCGCATTGGTTTGTATTTTATAAACAGACCTGAGTGGACCATAGTT
EST: CAAGCCGGACTGCGATAGGTTCTGGTCTTATTTACCATGGAATACCTGAA GGTGCGCGCATTGGTTTGTATTTTATAAACAGACCTGAGTGGACCATAGTTEST: gi|29626657|gb|CB631668.1|CB631668
genomic: CAAGCCGGACTGCGATAGGTTCTGGTCTTATTTACCATGGAATACCTGAAgtgagtcatt ... actgaaccagGGTGCGCGCATTGGTTTGTATTTTATAAACAGACCTGAGTGGACCATAGTT
EST: CAAGCCGGACTGCGATAGGTTCTGGTCTTATTTACCATGGAATACCTGAA GGTGCGCGCATTGGTTTGTATTTTATAAACAGACCTGAGTGGACCATAGTTEST: gi|29627108|gb|CB632119.1|CB632119
genomic: CAAGCCGGACTGCGATAGGTTCTGGTCTTATTTACCATGGAATACCTGAAgtgagtcatt ... actgaaccagGGTGCGCGCATTGGTTTGTATTTTATAAACAGACCTGAGTGGACCATAGTT
EST: CAAGCCGGACTGCGATAGGTTCTGGTCTTATTTACCATGGAATACCTGAA GGTGCGCGCATTGGTTTGTATTTTATAAACAGACCTGAGTGGACCATAGTTEST: gi|29630786|gb|CB635795.1|CB635795
genomic: CAAGCCGGACTGCGATAGGTTCTGGTCTTATTTACCATGGAATACCTGAAgtgagtcatt ... actgaaccagGGTGCGCGCATTGGTTTGTATTTTATAAACAGACCTGAGTGGACCATAGTT
EST: CAAGCCGGACTGCGATAGGTTCTGGTCTTATTTACCATGGAATACCTGAA GGTGCGCGCATTGGTTTGTATTTTATAAACAGACCTGAGTGGACCATAGTTEST: gi|29627343|gb|CB632354.1|CB632354
genomic: CAAGCCGGACTGCGATAGGTTCTGGTCTTATTTACCATGGAATACCTGAAgtgagtcatt ... actgaaccagGGTGCGCGCATTGGTTTGTATTTTATAAACAGACCTGAGTGGACCATAGTT
EST: CAAGCCGGACTGCGATAGGTTCTGGTCTTATTTACCATGGAATACCTGAA GGTGCGCGCATTGGTTTGTATTTTATAAACAGACCTGAGTGGACCATAGTTEST: gi|29674287|gb|CB670562.1|CB670562
genomic: CAAGCCGGACTGCGATAGGTTCTGGTCTTATTTACCATGGAATACCTGAAgtgagtcatt ... actgaaccagGGTGCGCGCATTGGTTTGTATTTTATAAACAGACCTGAGTGGACCATAGTT
EST: CAAGCCGGACTGCGATAGGTTCTGGTCTTATTTACCATGGAATACCTGAA GGTGCGCGCATTGGTTTGTATTTTATAAACAGACCTGAGTGGACCATAGTTEST: gi|58658513|gb|CK047193.1|CK047193
genomic: CAAGCCGGACTGCGATAGGTTCTGGTCTTATTTACCATGGAATACCTGAAgtgagtcatt ... actgaaccagGGTGCGCGCATTGGTTTGTATTTTATAAACAGACCTGAGTGGACCATAGTT
EST: CAAGCCGGACTGCGATAGGTTCTGGTCTTATTTACCATGGAATACCTGAA GGTGCGCGCATTGGTTTGTATTTTATAAACAGACCTGAGTGGACCATAGTTEST: gi|33801569|gb|CF326656.1|CF326656
genomic: CAAGCCGGACTGCGATAGGTTCTGGTCTTATTTACCATGGAATACCTGAAgtgagtcatt ... actgaaccagGGTGCGCGCATTGGTTTGTATTTTATAAACAGACCTGAGTGGACCATAGTT
EST: CAAGCCGGACTGCGATAGGTTCTGGTCTTATTTACCATGGAATACCTGAA GGTGCGCGCATTGGTTTGTATTTTATAAACAGACCTGAGTGGACCATAGTTEST: gi|117224882|gb|CT845959.1|CT845959
genomic: CAAGCCGGACTGCGATAGGTTCTGGTCTTATTTACCATGGAATACCTGAAgtgagtcatt ... actgaaccagGGTGCGCGCATTGGTTTGTATTTTATAAACAGACCTGAGTGGACCATAGTT
EST: CAAGCCGGACTGCGATAGGTTCTGGTCTTATTTACCATGGAATACCTGAA GGTGCGCGCATTGGTTTGTATTTTATAAACAGACCTGAGTGGACCATAGTT
genomic: CAAGCCGGACTGCGATAGGTTCTGGTCTTATTTACCATGGAATACCTGAAgtgagtcatt ... actgaaccagGGTGCGCGCATTGGTTTGTATTTTATAAACAGACCTGAGTGGACCATAGTT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CTACAAATGGATGACATATGGAGAAGCTAGTACAAGCCGGACTGCGATAGGTTCTGGTCTTATTTACCATGGAATACCTGAAgtgagtcattatgatctcaacaagcaccgtccttctgattttaactactaacaggcagatcttgtcacacattgccataatgatatagcatttgtggttacacttacagattcctttttttaaacttgcattaaataattttctaaaactgaaccag
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