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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACAATTTAGTGATGTATGTTAAATCACCAGAAACTGTGGAGTTGACAGTTTCCTTGACAAGTTCTGATGGGTCGCAAAATCTGGCTTCAAGTACCATACCgtcagtgcctttgctctcaatactgggacaggagaacaaggatgtctgcccattcccattagttgaaagaattatattgttgcag

Basic information

species Oryza sativa
transcript LOC_Os12g03470.5
intron # 5
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|29627933|gb|CB632944.1|CB632944
EST:     TCCTTGACAAGTTCTGATGGGTCGCAAAATCTGGCTTCAAGTACCATACC                         GGTTTCTGGTGCGTCGAATTGGACAAAACTGGAGCAGAAGTTGGTTGCTAA
genomic: TCCTTGACAAGTTCTGATGGGTCGCAAAATCTGGCTTCAAGTACCATACCgtcagtgcct ... attgttgcagGGTTTCTGGTGCGTCGAATTGGACAAAACTGGAGCAGAAGTTGGTTGCTAA
EST: gi|29624170|gb|CB629181.1|CB629181
EST:     TCCTTGACAAGTTCTGATGGGTCGCAAAATCTGGCTTCAAGTACCATACC                         GGTTTCTGGTGCGTCGAATTGGACAAAACTGGAGCAGAAGTTGGTTGCTAA
genomic: TCCTTGACAAGTTCTGATGGGTCGCAAAATCTGGCTTCAAGTACCATACCgtcagtgcct ... attgttgcagGGTTTCTGGTGCGTCGAATTGGACAAAACTGGAGCAGAAGTTGGTTGCTAA
EST: gi|29624168|gb|CB629179.1|CB629179
EST:     TCCTTGACAAGTTCTGATGGGTCGCAAAATCTGGCTTCAAGTACCATACC                         GGTTTCTGGTGCGTCGAATTGGACAAAACTGGAGCAGAAGTTGGTTGCTAA
genomic: TCCTTGACAAGTTCTGATGGGTCGCAAAATCTGGCTTCAAGTACCATACCgtcagtgcct ... attgttgcagGGTTTCTGGTGCGTCGAATTGGACAAAACTGGAGCAGAAGTTGGTTGCTAA
EST: gi|33677669|gb|CF305908.1|CF305908
EST:     TCCTTGACAAGTTCTGATGGGTCGCAAAATCTGGCTTCAAGTACCATACC                         GGTTTCTGGTGCGTCGAATTGGACAAAACTGGAGCAGAAGTTGGTTGCTAA
genomic: TCCTTGACAAGTTCTGATGGGTCGCAAAATCTGGCTTCAAGTACCATACCgtcagtgcct ... attgttgcagGGTTTCTGGTGCGTCGAATTGGACAAAACTGGAGCAGAAGTTGGTTGCTAA
EST: gi|29667031|gb|CB663306.1|CB663306
EST:     TCCTTGACAAGTTCTGATGGGTCGCAAAATCTGGCTTCAAGTACCATACC                         GGTTTCTGGTGCGTCGAATTGGACAAAACTGGAGCAGAAGTTGGTTGCTAA
genomic: TCCTTGACAAGTTCTGATGGGTCGCAAAATCTGGCTTCAAGTACCATACCgtcagtgcct ... attgttgcagGGTTTCTGGTGCGTCGAATTGGACAAAACTGGAGCAGAAGTTGGTTGCTAA
EST: gi|29630007|gb|CB635016.1|CB635016
EST:     TCCTTGACAAGTTCTGATGGGTCGCAAAATCTGGCTTCAAGTACCATACC                         GGTTTCTGGTGCGTCGAATTGGACAAAACTGGAGCAGAAGTTGGTTGCTAA
genomic: TCCTTGACAAGTTCTGATGGGTCGCAAAATCTGGCTTCAAGTACCATACCgtcagtgcct ... attgttgcagGGTTTCTGGTGCGTCGAATTGGACAAAACTGGAGCAGAAGTTGGTTGCTAA
EST: gi|33675310|gb|CF303549.1|CF303549
EST:     TCCTTGACAAGTTCTGATGGGTCGCAAAATCTGGCTTCAAGTACCATACC                         GGTTTCTGGTGCGTCGAATTGGACAAAACTGGAGCAGAAGTTGGTTGCTAA
genomic: TCCTTGACAAGTTCTGATGGGTCGCAAAATCTGGCTTCAAGTACCATACCgtcagtgcct ... attgttgcagGGTTTCTGGTGCGTCGAATTGGACAAAACTGGAGCAGAAGTTGGTTGCTAA