1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
CTACAATCATCAGACATTTCTAAAGAAAAGCAAGCTGATTCAACTTTAGTAGACATGCTGAAGgtattcataatcactcttcttttgtccatcccccttatttgtatttcccctagttgttatataactgaaaaattaaagatttttaaatgcttataatatctatgctctttactag
species | Oryza sativa |
transcript | LOC_Os12g03060.1 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: ACATTTCTAAAGAAAAGCAAGCTGATTCAACTTTAGTAGACATGCTGAAG AACTCCTTTGCAAGCTCCGAGTTTTCCATGGCATTCCCCTATGTTGCCATGEST: gi|86904894|gb|CI310687.1|CI310687
genomic: ACATTTCTAAAGAAAAGCAAGCTGATTCAACTTTAGTAGACATGCTGAAGgtattcataa ... tctttactagAACTCCTTTGCAAGCTCCGAGTTTTCCATGGCATTCCCCTATGTTGCCATG
EST: ACATTTCTAAAGAAAAGCAAGCTGATTCAACTTTAGTAGACATGCTGAAG AACTCCTTTGCAAGCTCCGAGEST: gi|33653554|gb|CF276168.1|CF276168
genomic: ACATTTCTAAAGAAAAGCAAGCTGATTCAACTTTAGTAGACATGCTGAAGgtattcataa ... tctttactagAACTCCTTTGCAAGCTCCGAG
EST: ACATTTCTAAAGAAAAGCAAGCTGATTCAGCTTTAGTAGACATGCTGAAG AACTCCTTTGCAAGCTCCGAGTTTTCCATGGCATTCCCCTATGTTGCCATGEST: gi|58668824|gb|CK057510.1|CK057510
genomic: ACATTTCTAAAGAAAAGCAAGCTGATTCAACTTTAGTAGACATGCTGAAGgtattcataa ... tctttactagAACTCCTTTGCAAGCTCCGAGTTTTCCATGGCATTCCCCTATGTTGCCATG
EST: ACATTTCTAAAGAAAAGCAAGCTGATTCAACTTTAGTAGACATGCTGAAG AACTCCTTTGCAAGCTCCGAGTTTTCCATGGCATTCCCCTATGTTGCCATGEST: gi|29657293|gb|CB653568.1|CB653568
genomic: ACATTTCTAAAGAAAAGCAAGCTGATTCAACTTTAGTAGACATGCTGAAGgtattcataa ... tctttactagAACTCCTTTGCAAGCTCCGAGTTTTCCATGGCATTCCCCTATGTTGCCATG
EST: ACATTTCTAAAGAAAAGCAAGCTGATTCAACTTTAGTAGACATGCTGAAG AACTCCTTTGCAAGCTCCGAGTTTTCCATGGCATTCCCCTATGTTGCCATGEST: gi|66920771|gb|CX107619.1|CX107619
genomic: ACATTTCTAAAGAAAAGCAAGCTGATTCAACTTTAGTAGACATGCTGAAGgtattcataa ... tctttactagAACTCCTTTGCAAGCTCCGAGTTTTCCATGGCATTCCCCTATGTTGCCATG
EST: ACATTTCTAAAGAAAAGCAAGCTGATTCAACTTTAGTAGACATGCTGAAG AACTCCTTTGCAAGCTCCGAGTTTTCCATGGCATTCCCCTATGTTGCCATGEST: gi|88356178|gb|CI627626.1|CI627626
genomic: ACATTTCTAAAGAAAAGCAAGCTGATTCAACTTTAGTAGACATGCTGAAGgtattcataa ... tctttactagAACTCCTTTGCAAGCTCCGAGTTTTCCATGGCATTCCCCTATGTTGCCATG
EST: ACATTTCTAAAGAAAAGCAAGCTGATTCAACTTTAGTAGACATGCTGAAG AACTCCTTTGCAAGCTCCGAGEST: gi|25798686|gb|CA754647.1|CA754647
genomic: ACATTTCTAAAGAAAAGCAAGCTGATTCAACTTTAGTAGACATGCTGAAGgtattcataa ... tctttactagAACTCCTTTGCAAGCTCCGAG
EST: ACATTTCTAAAGAAAAGCAAGCTGATTCAACTTTAGTAGACATGCTGAAG AACTCCTTTGCAAGCTCCGAGTTTTCCATGGCATTCCCCTATGTTGCCATGEST: gi|27576657|gb|CA999351.1|CA999351
genomic: ACATTTCTAAAGAAAAGCAAGCTGATTCAACTTTAGTAGACATGCTGAAGgtattcataa ... tctttactagAACTCCTTTGCAAGCTCCGAGTTTTCCATGGCATTCCCCTATGTTGCCATG
EST: ACATTTCTAAAGAAAAGCAAGCTGATTCAACTTTAGTAGACATGCTGAAG AACTCCTTTGCAAGCTCCGAGTTTTCCATGGCATTCCCCTATGTTGCCATGEST: gi|29686826|gb|CB683101.1|CB683101
genomic: ACATTTCTAAAGAAAAGCAAGCTGATTCAACTTTAGTAGACATGCTGAAGgtattcataa ... tctttactagAACTCCTTTGCAAGCTCCGAGTTTTCCATGGCATTCCCCTATGTTGCCATG
EST: ACATTTCTAAAGAAAAGCAAGCTGATTCAACTTTAGTAGACATGCTGAAG AACTCCTTTGCAAGCTCCGAGTTTTCCATGGCATTCCCCTATGTTGCCATGEST: gi|58597158|gb|CK007686.1|CK007686
genomic: ACATTTCTAAAGAAAAGCAAGCTGATTCAACTTTAGTAGACATGCTGAAGgtattcataa ... tctttactagAACTCCTTTGCAAGCTCCGAGTTTTCCATGGCATTCCCCTATGTTGCCATG
EST: ACATTTCTAAAGAAAAGCAAGCTGATTCAACTTTAGTAGACATGCTGAAG AACTCCTTTGCAAGCTCCGAGTTTTCCATGGCATTCCCCTATGTTGCCATG
genomic: ACATTTCTAAAGAAAAGCAAGCTGATTCAACTTTAGTAGACATGCTGAAGgtattcataa ... tctttactagAACTCCTTTGCAAGCTCCGAGTTTTCCATGGCATTCCCCTATGTTGCCATG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CTACAATCATCAGACATTTCTAAAGAAAAGCAAGCTGATTCAACTTTAGTAGACATGCTGAAGgtattcataatcactcttcttttgtccatcccccttatttgtatttcccctagttgttatataactgaaaaattaaagatttttaaatgcttataatatctatgctctttactag
- - - - - - - - - - AAAGAA
- - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - AGCAAG
- - - - - - - - - - - - - - - CAAGCT
- - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - GCTGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG