Sequence
atgc intronic sequence ATGC exonic sequenceATCGGAAGGCAAAGGGCGTGTCTATGTCCATTGCACTGCTGGACTTGGGAGAGCACCTGCAGTTGCAATTGCTTACATGTTTTGGTTCGAGAATATGAATgtaggtttcatcttcttgaattcttaacttgtcagggttataagccaggccacattcttagcatttatcttttgcttgcag
Basic information
species | Oryza sativa |
transcript | LOC_Os12g02120.2 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: LOC_Os12g02120.2 (Oryza sativa), 5'ss of exon 5
lower sequence: GRMZM2G000660_T01 (Zea mays), 5'ss of exon 3
ATCGGAAGGCAAAGGGCGTGTCTATGTCCATTGCACTGCTGGACTTGGGAGAGCACCTGCAGTTGCAATTGCTTACATGTTTTGGTTCGAGAATATGAATgtaggtttcatcttcttgaattcttaacttgtcagggttataagccaggccacattcttagc-atttatctt-ttgcttgcag
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GTCGCAGCGCAAAGGGCGGGTTTATGTCCACTGCACCGCTGGGCTTGGGAGAGCACCTGCGGTTGCAATCGCTTACATGTTTTGGTTTGAGAACATGGATgtaagtct-gccccatctcatcatatgcgtagcactatgagatttgaaactgtttttttgcttatctatcctcttacacgcag
upper sequence: LOC_Os12g02120.2 (Oryza sativa), 5'ss of exon 5
lower sequence: Vv13s0067g02510.t01 (Vitis vinifera), 5'ss of exon 3
ATCGGAAGGCAAAGGGCGTGTCTATGTCCATTGCACTGCTGGACTTGGGAGAGCACCTGCAGTTGCAATTGCTTACATGTTTTGGTTCGAGAATATGAATgtaggtttcatcttcttgaattcttaacttgtcagggttataagccaggc--cacattcttagcatttatcttttgcttgcag------------------
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CTCAGAGGGAAAAGGAAAGGTATATGTACATTGTACAGCCGGATTGGGGAGGGCACCAGCCGTTGCAATTGCTTACATGTTCTGGTTTTGTGGCATGGATgtgagtgtc-taccctctcatagttaattcttccttgcctcaaatcatgtattgcagtattcaaaatcagttgtagtaaataatgggggagaattttaagcMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|29621076|gb|CB626087.1|CB626087EST: GAGCACCTGCAGTTGCAATTGCTTACATGTTTTGGTTCGAGAATATGAAT CTTAAGACAGCTTATGAGAAACTAACTTCTAAAAGGCCCTGTGGACCCAAT
genomic: GAGCACCTGCAGTTGCAATTGCTTACATGTTTTGGTTCGAGAATATGAATgtaggtttca ... ttgcttgcagCTTAAGACAGCTTATGAGAAACTAACTTCTAAAAGGCCCTGTGGACCCAAT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
ATCGGAAGGCAAAGGGCGTGTCTATGTCCATTGCACTGCTGGACTTGGGAGAGCACCTGCAGTTGCAATTGCTTACATGTTTTGGTTCGAGAATATGAATgtaggtttcatcttcttgaattcttaacttgtcagggttataagccaggccacattcttagcatttatcttttgcttgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG