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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTGCTGGTAACCTAGTGAATGCATTGCTGGATGCTATATTTATTTTTCCACTTGGTCTAGGAGTAAGTGGCGCTGCATTGGCAACAGTGACTTCTGAgtatgttgaacttactgtgagactttacaacaaatttaccttttctttcaattgtagtctcttcacttatctcaatattttctataagttctcatagatccctgatctatttttcataattatctgcatgtatttag

Basic information

species Oryza sativa
transcript LOC_Os12g01580.1
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os12g01580.1 (Oryza sativa), 5'ss of exon 5
lower sequence: GRMZM2G150557_T01 (Zea mays), 5'ss of exon 2
TTGCTGGTAACCTAGTGAATGCATTGCTGGATGCTATATTTATTTTTCCACTTGGTCTAGGAGTAAGTGGCGCTGCATTGGCAACAGTGACTTCTGAgtatgttgaacttactgtgaga-ctttacaa-caaatttaccttttctttcaattgtagtctcttcacttatctcaatattttctataagttctcatagatccctgatctatttttcataattatctgcatgtatttag
 |||||| |||||| | |||||| | || |||||  || ||||||||||| |||||||||||||||| || |||||| |||| || ||||| || |||||||||||    |  |||| | | ||| ||  ||| | |  ||||||| |  ||| ||| |||   | | | | |  ||| ||||      || |||| |  || |  |||||||     || ||| |||||||| ||
GTGCTGGCAACCTATTAAATGCAGTACTTGATGCATTACTTATTTTTCCAATTGGTCTAGGAGTAAGCGGTGCTGCACTGGCCACTGTGACCTCGGAgtatgttgatgccatcgtgatatccttataaataaaatgagattttcttac--ttggagtatctatgcctctattataattatctaa-----cttatagttgtctaaagtattttt-----ttgtctacatgtattcag

upper sequence: LOC_Os12g01580.1 (Oryza sativa), 5'ss of exon 5
lower sequence: GRMZM5G890665_T02 (Zea mays), 5'ss of exon 5
TTGCTGGTAACCTAGTGAATGCATTGCTGGATGCTATATTTATTTTTCCACTTGGTCTAGGAGTAAGTGGCGCTGCATTGGCAACAGTGACTTCTGAgtatgttgaacttactgtgagactttacaacaaatttaccttttctttcaattgtagtctcttcacttatctcaatatt-ttctataagttctcatagatccctgatctatttttcataattatctgcatgtatttag
 |||||| |||||| | |||||||| || ||||   || ||||||||||||||||||||||||||||||| |||||| |||| || ||||| ||||||||||||||    |   | |  |||   || ||| | |  |||||||  | ||| ||| ||||  | | | |   |||| || | |||   ||  ||  |     |  ||||| |  |  || ||| |||||| ||||
GTGCTGGCAACCTATTAAATGCATTACTTGATGTGGTACTTATTTTTCCACTTGGTCTAGGAGTAAGTGGTGCTGCACTGGCCACCGTGACCTCTGAgtatgttgatgccatcat-attcttataaataaaataatattttctt--atttggagtatctttgcctctgttgttattattatctaa---cttgtaattattgaaagtatttatattttttgtctacatgtacttag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|570085|gb|D40934.1|D40934
EST:     CCACTTGGTCTAGGAGTAAGTGGCGCTGCATTGGCAACAGTGACTTCTGA                         GTATTTGACAGCGTTCATCCTCCTCT
genomic: CCACTTGGTCTAGGAGTAAGTGGCGCTGCATTGGCAACAGTGACTTCTGAgtatgttgaa ... atgtatttagGTATTTGACAGCGTTCATCCTCCTCT