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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATTGTATGTGACACCTGAAAAGATATCCAAAAGTAAAAGGTTCATGTCTAAGCTTGAGAAATGCCACCATGCAGGGCGTCTTTCTCTCATTGCAATAGATgtgagttttttaccacacaataaagcatgtttactctgattaaggttggatgatgtgcttgtacatgcttttgcttactctgtctctcttaagaatattg...

Basic information

species Oryza sativa
transcript LOC_Os11g48090.3
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os11g48090.3 (Oryza sativa), 5'ss of exon 5
lower sequence: GRMZM2G451856_T02 (Zea mays), 5'ss of exon 5
ATTGTATGTGACACCTGAAAAGATATCCAAAAGTAAAAGGTTCATGTCTAAGCTTGAGAAATGCCACCATGCAGGGCGTCTTTCTCTCATTGCAATAGATgtgagttttttaccacacaataaagcatgtttactctgattaaggttggatgatgtgcttgtacatgcttttg-cttactctgtctctcttaagaatattg----
||| |||||||||||||||||||| || |||||||||||||||||||||||||| ||||||||||| ||||| || ||||||||||| |||||||||||||| |||     |  |||   | |    | |||  | | |  || |      | | | | || ||||     |  | |  | | ||||    ||| ||  |     
ATTATATGTGACACCTGAAAAGATCTCAAAAAGTAAAAGGTTCATGTCTAAGCTCGAGAAATGCCATCATGCCGGTCGTCTTTCTCTGATTGCAATAGATgttagta----attacaagcttatcttttttttttgtcagcaatgcccacagttattcatg-acatttacatatcctggtttctctcaaaaaaggatcctttttg
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|58672003|gb|CK060689.1|CK060689
EST:     AGCTTGAGAAATGCCACCATGCAGGGCGTCTTTCTCTCATTGCAATAGAT                         GAGGCACACTGCTGTAGT
genomic: AGCTTGAGAAATGCCACCATGCAGGGCGTCTTTCTCTCATTGCAATAGATgtgagttttt ... tatcatgcagGAGGCACACTGCTGTAGT
EST: gi|58671155|gb|CK059841.1|CK059841
EST:     AGCTTGAGAAATGCCACCATGCAGGGCGTCTTTCTCTCATTGCAATAGAT                         GAGGCACACTGCTGTAGTCAATGGGGCCATGATTTTCGGCCAGACTACAAG
genomic: AGCTTGAGAAATGCCACCATGCAGGGCGTCTTTCTCTCATTGCAATAGATgtgagttttt ... tatcatgcagGAGGCACACTGCTGTAGTCAATGGGGCCATGATTTTCGCCCAGACTACAAG
EST: gi|58661067|gb|CK049747.1|CK049747
EST:     TTCTCTCATTGCAATAGAT                         AAGGCACACTGCTGTAGTCAATGGGGCCATGATTTTCGCCCAGACTACAAG
genomic: TTCTCTCATTGCAATAGATgtgagttttt ... tatcatgcagGAGGCACACTGCTGTAGTCAATGGGGCCATGATTTTCGCCCAGACTACAAG
EST: gi|58690628|gb|CK079315.1|CK079315
EST:     AGCTTGAGAAATGCCACCATGCAGGGCGTCTTTCTCTCATTGCAATAGAT                         GAGGCACACTGCTGTAGTCAATGGGGCCATGATTTTCGCCCAGACTACAAG
genomic: AGCTTGAGAAATGCCACCATGCAGGGCGTCTTTCTCTCATTGCAATAGATgtgagttttt ... tatcatgcagGAGGCACACTGCTGTAGTCAATGGGGCCATGATTTTCGCCCAGACTACAAG
EST: gi|29673292|gb|CB669567.1|CB669567
EST:     AGCTTGAGAAATGCCACCATGCAGGGCGTCTTTCTCTCATTGCAATAGAT                         GAGGCACACTGCTGTAGTCAATGGGGCCATGATTTTCGCCCAGACTACAAG
genomic: AGCTTGAGAAATGCCACCATGCAGGGCGTCTTTCTCTCATTGCAATAGATgtgagttttt ... tatcatgcagGAGGCACACTGCTGTAGTCAATGGGGCCATGATTTTCGCCCAGACTACAAG