Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTCAGAAATGCAACAGAAATGCTACTGAATGTGACTTCAGGCCCTGCCTCCATAGTTCAGgtcagaaacaaattgtaatttctttaccaactacaatgaatgcatagtgtgggtactaaacatggtgaaatattttttgtcacacatgcag

Basic information

species Oryza sativa
transcript LOC_Os11g42510.1
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os11g42510.1 (Oryza sativa), 5'ss of exon 5
lower sequence: GRMZM2G006480_T01 (Zea mays), 5'ss of exon 5
GTCAGAAATGCAACAGAAATGCTACTGAATGTGACTTCAGGCCCTGCCTCCATAGTTCAGgtcag-aaacaaattgtaatttctttaccaactacaatgaatgcatagtgtgggtactaaacatggtgaaatattttttgtcacacatgcag
|||||   ||| || || ||||| || || |||||||| ||||||||||||||||| |||||||| || ||  |  | |      | | |  |  |   ||   | |  |||   || | ||      | ||    |||||    || | ||
GTCAGGGCTGCGACCGAGATGCTGCTCAACGTGACTTCTGGCCCTGCCTCCATAGTCCAGgtcagcaagcagttcttcaaaatgattctacatgtatccaaaaaaaaaggtgaacac-atactgatacagatggaatttgttg-gcacgtag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|29614602|gb|CB619615.1|CB619615
EST:     CAACAGAAATGCTACTGAATGTGACTTCAGGCCCTGCGTCCATAGTTCAG                         GCTGCAGTTCCTAAGATTCTCTCAAACGAACACAATGAATTCCATCGAAAC
genomic: CAACAGAAATGCTACTGAATGTGACTTCAGGCCCTGCCTCCATAGTTCAGgtcagaaaca ... acacatgcagGCTGCAGTTCCTAAGATTCTCTCAAACGAACACAATGAATTCCATCGAAAC
EST: gi|29636664|gb|CB641673.1|CB641673
EST:     CAACAGAAATGCTACTGAATGTGACTTCAGGCCCTGCCTCCATAGTTCAG                         GCTGCAGTTCCTAAGATTCTCTCAAACGAACACAATGAATTCCATCGAAAC
genomic: CAACAGAAATGCTACTGAATGTGACTTCAGGCCCTGCCTCCATAGTTCAGgtcagaaaca ... acacatgcagGCTGCAGTTCCTAAGATTCTCTCAAACGAACACAATGAATTCCATCGAAAC
EST: gi|29673666|gb|CB669941.1|CB669941
EST:     CAACAGAAATGCTACTGAATGTGACTTCAGGCCCTGCCTCCATAGTTCAG                         GCTGCAGTTCCTAAGATTCTCTCAAACGAACACAATGAATTCCATCGAAAC
genomic: CAACAGAAATGCTACTGAATGTGACTTCAGGCCCTGCCTCCATAGTTCAGgtcagaaaca ... acacatgcagGCTGCAGTTCCTAAGATTCTCTCAAACGAACACAATGAATTCCATCGAAAC
EST: gi|29636535|gb|CB641544.1|CB641544
EST:     CAACAGAAATGCTACTGAATGTGACTTCAGGCCCTGCCTCCATAGTTCAG                         GCTGCAGTTCCTAAGATTCTCTCAAACGAACACAATGAATTCCATCGAAAC
genomic: CAACAGAAATGCTACTGAATGTGACTTCAGGCCCTGCCTCCATAGTTCAGgtcagaaaca ... acacatgcagGCTGCAGTTCCTAAGATTCTCTCAAACGAACACAATGAATTCCATCGAAAC
EST: gi|29636663|gb|CB641672.1|CB641672
EST:     CAACAGAAATGCTACTGAATGTGACTTCAGGCCCTGCCTCCATAGTTCAG                         GCTGCAGTTCCTAAGATTCTCTCAAACGAACACAATGAATTCCATCGAAAC
genomic: CAACAGAAATGCTACTGAATGTGACTTCAGGCCCTGCCTCCATAGTTCAGgtcagaaaca ... acacatgcagGCTGCAGTTCCTAAGATTCTCTCAAACGAACACAATGAATTCCATCGAAAC
EST: gi|29670359|gb|CB666634.1|CB666634
EST:     CAACAGAAATGCTACTGAATGTGACTTCAGGCCCTGCCTCCATAGTTCAG                         GCTGCAGTTCCTAAGATTCTCTCAAACGAACACAATGAATTCCATCGAAAC
genomic: CAACAGAAATGCTACTGAATGTGACTTCAGGCCCTGCCTCCATAGTTCAGgtcagaaaca ... acacatgcagGCTGCAGTTCCTAAGATTCTCTCAAACGAACACAATGAATTCCATCGAAAC
EST: gi|29668799|gb|CB665074.1|CB665074
EST:     CAACAGAAATGCTACTGAATGTGACTTCAGGCCCTGCCTCCATAGTTCAG                         GCTGCAGTTCCTAAGATTCTCTCAAACGAACACAATGAATTCCATCGAAAC
genomic: CAACAGAAATGCTACTGAATGTGACTTCAGGCCCTGCCTCCATAGTTCAGgtcagaaaca ... acacatgcagGCTGCAGTTCCTAAGATTCTCTCAAACGAACACAATGAATTCCATCGAAAC
EST: gi|58595127|gb|CF993435.1|CF993435
EST:     CAACAGAAATGCTACTGAATGTGACTTCAGGCCCTGCCTCCATAGTTCAG                         GCTGCAGTTCCTAAGATTCTCTCAAACGAACACAATGAATTCCATCGAAAC
genomic: CAACAGAAATGCTACTGAATGTGACTTCAGGCCCTGCCTCCATAGTTCAGgtcagaaaca ... acacatgcagGCTGCAGTTCCTAAGATTCTCTCAAACGAACACAATGAATTCCATCGAAAC