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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTACATGTGTTTCATGGGAATCGTCTCTGTACAAAAAATGgtgagcacattcattaaggacaacttcagatgttgttcgcctagaattttgcatcgtcggacactatatttgttactaaaaaaaagttcatggaggcagc...

Basic information

species Oryza sativa
transcript LOC_Os11g36070.1
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os11g36070.1 (Oryza sativa), 5'ss of exon 5
lower sequence: GRMZM2G104449_T02 (Zea mays), 5'ss of exon 5
GTACATGTGTTTCATGGGAATCGTCTCTGTACAAAAAATGgtgagcacattcattaaggacaacttcagatgttgttcgc--ctagaattt-tgcatcgtcggacactatatttgttactaaaaaaaagttcatggaggcagc-
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GTACATGTGTGTCATGGGAATCAACTTTATACAAAAAATGgtgagcaca---aacaacgttttcctcaagt-ttgttagaaattaaactttctccgaaactacacatgacattctcaaattatatttaactttttcttgcagaa
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|29672693|gb|CB668968.1|CB668968
EST:     GTACATGTGTTTCATGGGAATCGTCTCTGTACAAAAAATG                         GTTTCCACAATACAACCTTCCAACTTTTAAAGTTGCTCAGTCAGGCTGTTT
genomic: GTACATGTGTTTCATGGGAATCGTCTCTGTACAAAAAATGgtgagcacat ... tgtgttccagGTTTCCACAATACAACCTTCCAACTTTTAAAGTTGCTCAGTCAGGCTGTTT
EST: gi|58609633|gb|CK037666.1|CK037666
EST:     GTACATGTGTTTCATGGGAATCGTCTCTGTACAAAAAATG                         GTTTCCACAATACAACCTTCCAACTTTTAAAGTTGCTCAGTCAGGCTGTTT
genomic: GTACATGTGTTTCATGGGAATCGTCTCTGTACAAAAAATGgtgagcacat ... tgtgttccagGTTTCCACAATACAACCTTCCAACTTTTAAAGTTGCTCAGTCAGGCTGTTT
EST: gi|29626153|gb|CB631164.1|CB631164
EST:     GTACATGTGTTTCATGGGAATCGTCTCTGTACAAAAAATG                         GTTTCCACAATACAACCTTCCAACTTTTAAAGTTGCTCAGTCAGGCTGTTT
genomic: GTACATGTGTTTCATGGGAATCGTCTCTGTACAAAAAATGgtgagcacat ... tgtgttccagGTTTCCACAATACAACCTTCCAACTTTTAAAGTTGCTCAGTCAGGCTGTTT
EST: gi|29665385|gb|CB661660.1|CB661660
EST:     GTACATGTGTTTCATGGGAATCGTCTCTGTACAAAAAATG                         GTTTCCACAATACAACCTTCCAACTTTTAAAGTTGCTCAGTCAGGCTGTTT
genomic: GTACATGTGTTTCATGGGAATCGTCTCTGTACAAAAAATGgtgagcacat ... tgtgttccagGTTTCCACAATACAACCTTCCAACTTTTAAAGTTGCTCAGTCAGGCTGTTT
EST: gi|25778077|gb|CA752829.1|CA752829
EST:     GTACAAAAAATG                         GTTTCCACAATACAACCTTCCAACTTTTAAAGTTGCTCAGTCAGGCTGTTT
genomic: GTACAAAAAATGgtgagcacat ... tgtgttccagGTTTCCACAATACAACCTTCCAACTTTTAAAGTTGCTCAGTCAGGCTGTTT
EST: gi|29623258|gb|CB628269.1|CB628269
EST:     GTACATGTGTTTCATGGGAATCGTCTCTGTACAAAAAATG                         GTTTCCACAATACAACCTTCCAACTTTTAAAGTTGCTCAGTCAGGCTGTTT
genomic: GTACATGTGTTTCATGGGAATCGTCTCTGTACAAAAAATGgtgagcacat ... tgtgttccagGTTTCCACAATACAACCTTCCAACTTTTAAAGTTGCTCAGTCAGGCTGTTT
EST: gi|29626975|gb|CB631986.1|CB631986
EST:     GTACATGTGTTTCATGGGAATCGTCTCTGTACAAAAAATG                         GTTTCCACAATACAACCTTCCAACTTTTAAAGTTGCTCAGTCAGGCTGTTT
genomic: GTACATGTGTTTCATGGGAATCGTCTCTGTACAAAAAATGgtgagcacat ... tgtgttccagGTTTCCACAATACAACCTTCCAACTTTTAAAGTTGCTCAGTCAGGCTGTTT
EST: gi|29623293|gb|CB628304.1|CB628304
EST:     GTACATGTGTTTCATGGGAATCGTCTCTGTACAAAAAATG                         GTTTCCACAATACAACCTTCCAACTTTTAAAGTTGCTCAGTCAGGCTGTTT
genomic: GTACATGTGTTTCATGGGAATCGTCTCTGTACAAAAAATGgtgagcacat ... tgtgttccagGTTTCCACAATACAACCTTCCAACTTTTAAAGTTGCTCAGTCAGGCTGTTT