1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
TCAAAACTCAATGCCAGAGCTTCCTGAAGCAAAGCGTAGGCGCTTCGAGAATATGGGACTCAGCATGCAAGATGTTCTTTTCCTTGCTAATGACGATAATgtaataatcttctgtattgttttcctttccccttgcgatggatgtggatatttactgcagttgattagatatctctgcattttaaaccaggaggaactca...
species | Oryza sativa |
transcript | LOC_Os11g34210.1 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: ATATGGGACTCAGCATGCAAGATGTTCTTTTCCTTGCTAATGACGATAAT GTTGCTCGGTTCTTCGATTCTACCCTTGAGCATGGCGCGGATGCAAAGCTGEST: gi|58606373|gb|CK034406.1|CK034406
genomic: ATATGGGACTCAGCATGCAAGATGTTCTTTTCCTTGCTAATGACGATAATgtaataatct ... ttcctcccagGTTGCTCGGTTCTTCGATTCTACCCTTGAGCACGGCGCGGATGCAAAGCTG
EST: ATATGGGACTCAGCATGCAAGATGTTCTTTTCCTTGCTAATGACGATAAT GTTGCTCGGTTCTTCGATTCTACCCTTGAGCATGGCGCGGATGCAAAGCTGEST: gi|86493642|gb|CI136275.1|CI136275
genomic: ATATGGGACTCAGCATGCAAGATGTTCTTTTCCTTGCTAATGACGATAATgtaataatct ... ttcctcccagGTTGCTCGGTTCTTCGATTCTACCCTTGAGCACGGCGCGGATGCAAAGCTG
EST: TGCTAATGACGATAAT GTTGCTCGGTTCTTCGATTCTACCCTTGAGCACGGCGCGGATGCAAAGCTGEST: gi|29646032|gb|CB651039.1|CB651039
genomic: TGCTAATGACGATAATgtaataatct ... ttcctcccagGTTGCTCGGTTCTTCGATTCTACCCTTGAGCACGGCGCGGATGCAAAGCTG
EST: ATATGGGACTCAGCATGCAAGATGTTCTTTTCCTTGCTAATGACGATAAT GTTGCTCGGTTCTTCGATTCTACCCTTGAGCACGGCGCGGATGCAAAGCTGEST: gi|29641132|gb|CB646139.1|CB646139
genomic: ATATGGGACTCAGCATGCAAGATGTTCTTTTCCTTGCTAATGACGATAATgtaataatct ... ttcctcccagGTTGCTCGGTTCTTCGATTCTACCCTTGAGCACGGCGCGGATGCAAAGCTG
EST: ATATGGGACTCAGCATGCAAGATGTTCTTTTCCTTGCTAATGACGATAAT GTTGCTCGGTTCTTCGATTCTACCCTTGAGCACGGCGCGGATGCAAAGCTG
genomic: ATATGGGACTCAGCATGCAAGATGTTCTTTTCCTTGCTAATGACGATAATgtaataatct ... ttcctcccagGTTGCTCGGTTCTTCGATTCTACCCTTGAGCACGGCGCGGATGCAAAGCTG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TCAAAACTCAATGCCAGAGCTTCCTGAAGCAAAGCGTAGGCGCTTCGAGAATATGGGACTCAGCATGCAAGATGTTCTTTTCCTTGCTAATGACGATAATgtaataatcttctgtattgttttcctttccccttgcgatggatgtggatatttactgcagttgattagatatctctgcattttaaaccaggaggaactca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ccccttgc