1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
GTGGAAGAGAAGCTTGAGTCAGGTCAAGGAAAATCAACCCTTCGCCGGTTCTTTGGAAGATTTTGTACACCGATCTTTTTGGAGgtcatcttttgtcaccttataaatgtttgttaaatgttccaaactgggactgcatgcgtattcagtacttatattcagatgttaaatgtgttgtacaata...
species | Oryza sativa |
transcript | LOC_Os11g28300.2 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: CAACCCTTCGCCGGTTCTTTGGAAGATTTTGTACACCGATCTTTTTGGAG GCTTTTATCTTAACCTTCTTAGCTGAATGGGGCGACCGAAGCCAAATAGCAEST: gi|86256354|gb|CI012644.1|CI012644
genomic: CAACCCTTCGCCGGTTCTTTGGAAGATTTTGTACACCGATCTTTTTGGAGgtcatctttt ... cttcccgcagGCTTTTATCTTAACCTTCTTAGCTGAATGGGGCGACCGAAGCCAAATAGCA
EST: TGGAAGATTTTGTACACCGATCTTTTTGGAG GCTTTTATCTTAACCTTCTTAGCTGAATGGGGCGACCGAAGCCAAATAGCAEST: gi|86853706|gb|CI330557.1|CI330557
genomic: TGGAAGATTTTGTACACCGATCTTTTTGGAGgtcatctttt ... cttcccgcagGCTTTTATCTTAACCTTCTTAGCTGAATGGGGCGACCGAAGCCAAATAGCA
EST: TTTTGTACACCGATCTTTTTGGAG GCTTTTATCTTAACCTTCTTAGCTGAATGGGGCGACCGAAGCCAAATAGCAEST: gi|86602153|gb|CI260623.1|CI260623
genomic: TTTTGTACACCGATCTTTTTGGAGgtcatctttt ... cttcccgcagGCTTTTATCTTAACCTTCTTAGCTGAATGGGGCGACCGAAGCCAAATAGCA
EST: GTACACCGATCTTTTTGGAG GCTTTTATCTTAACCTTCTTAGCTGAATGGGGCGACCGAAGCCAAATAGCAEST: gi|88977113|gb|CI024850.1|CI024850
genomic: GTACACCGATCTTTTTGGAGgtcatctttt ... cttcccgcagGCTTTTATCTTAACCTTCTTAGCTGAATGGGGCGACCGAAGCCAAATAGCA
EST: GCCGGTTCTTTGGAAGATTTTGTACACCGATCTTTTTGGAG GCTTTTATCTTAACCTTCTTAGCTGAATGGGGCGACCGAAGCCAAATAGCA
genomic: GCCGGTTCTTTGGAAGATTTTGTACACCGATCTTTTTGGAGgtcatctttt ... cttcccgcagGCTTTTATCTTAACCTTCTTAGCTGAATGGGGCGACCGAAGCCAAATAGCA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTGGAAGAGAAGCTTGAGTCAGGTCAAGGAAAATCAACCCTTCGCCGGTTCTTTGGAAGATTTTGTACACCGATCTTTTTGGAGgtcatcttttgtcaccttataaatgtttgttaaatgttccaaactgggactgcatgcgtattcagtacttatattcagatgttaaatgtgttgtacaata
- - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG