1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
TTCGTTTATTGCAAGTCCAAGGTGGCCAGGCCATTCTAGCTATGCACAAGTGATTGTTCCTCCAGGGCTCGTTCAAGTTCCAGGGTGGAATCCTTATGCAgtatgtttatttctcccactttgacatttacgatcgtctattaaatgtatactcatccagtggagtagatggtgcaattcattggtttattgagaatgct...
species | Oryza sativa |
transcript | LOC_Os11g28270.1 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: TGATTGTTCCTCCAGGGCTCGTTCAAGTTCCAGGGTGGAATCCTTATGCA GCACAAATTGGTTCTTCATCCTCAGACGATCAACAGAGTACAGCTGGAGGTEST: gi|33796739|gb|CF324237.1|CF324237
genomic: TGATTGTTCCTCCAGGGCTCGTTCAAGTTCCAGGGTGGAATCCTTATGCAgtatgtttat ... gttttcttagGCACAAATTGGTTCTTCATCCTCAGACGATCAACAGAGGACAGCTGGAGGT
EST: TGATTGTTCCTCCAGGGCTCGTTCAAGTTCCAGGGTGGAATCCTTATGCA GCACAAATTGGTTCTTCATCCTCAGACGATCAACAGAGGACAGCTGGAGGTEST: gi|58694326|gb|CK083013.1|CK083013
genomic: TGATTGTTCCTCCAGGGCTCGTTCAAGTTCCAGGGTGGAATCCTTATGCAgtatgtttat ... gttttcttagGCACAAATTGGTTCTTCATCCTCAGACGATCAACAGAGGACAGCTGGAGGT
EST: TGATTGTTCCTCCAGGGCTCGTTCAAGTTCCAGGGTGGAATCCTTATGCA GCACAAATNGGTTCTTCATCCTCAGACGATCAACAGAGGACAGCTGGAGGTEST: gi|58679009|gb|CK067696.1|CK067696
genomic: TGATTGTTCCTCCAGGGCTCGTTCAAGTTCCAGGGTGGAATCCTTATGCAgtatgtttat ... gttttcttagGCACAAATTGGTTCTTCATCCTCAGACGATCAACAGAGGACAGCTGGAGGT
EST: TGATTGTTCCTCCAGTGCTCGTTCAAGTTCCAGTGTGGAATCCTTATGCA GCACAGGAGTTGGTTCTTCATCCTCAGACGATCAACAGAGGACAGCTGGAG
genomic: TGATTGTTCCTCCAGGGCTCGTTCAAGTTCCAGGGTGGAATCCTTATGCAgtatgtttat ... gttttcttagGCACA--AATTGGTTCTTCATCCTCAGACGATCAACAGAGGACAGCTGGAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TTCGTTTATTGCAAGTCCAAGGTGGCCAGGCCATTCTAGCTATGCACAAGTGATTGTTCCTCCAGGGCTCGTTCAAGTTCCAGGGTGGAATCCTTATGCAgtatgtttatttctcccactttgacatttacgatcgtctattaaatgtatactcatccagtggagtagatggtgcaattcattggtttattgagaatgct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ctcccac