1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
GATGTCTATTGTTTGAATGCTGATGGGTCTCTATTCGACGCTGCACTAATCTCAGCTGTTGCTGCATTTACACATTgtacgttccttatttctgatagcttatcttgatttgacatttttcactacttaattactcttcattttgaaatgtaaatatgctattgtaatatgtgcta...
species | Oryza sativa |
transcript | LOC_Os11g20689.1 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: GTCTCTATTCGACGCTGCACTAATCTCAGCTGTTGCTGCATTTACACATT TGGAAATTCCTTTGGTATCTGTCGGTGATGATGGTAGAGTATTTACTGTTGEST: gi|8528015|gb|AU092830.1|AU092830
genomic: GTCTCTATTCGACGCTGCACTAATCTCAGCTGTTGCTGCATTTACACATTgtacgttcct ... atatttgcagTGGAAATTCCTTTGGTATCTGTCGGTGATGATGGTAGAGTATTTACTGTTG
EST: GTCTCTATTCGACGCTGCACTAATCTCAGCTNTTGCTGCATTTACACATT TGGAAATTCCTTTGGTATCTGTCGGTGATGATGGTAGAGTATTTACTGTTGEST: gi|88216864|gb|CI216466.1|CI216466
genomic: GTCTCTATTCGACGCTGCACTAATCTCAGCTGTTGCTGCATTTACACATTgtacgttcct ... atatttgcagTGGAAATTCCTTTGGTATCTGTCGGTGATGATGGTAGAGTATTTACTGTTG
EST: TTGCTGCATTTACACATT TGGAAATTCCTTTGGTATCTGTCGGTGATGATGGTAGAGTATTTACTGTTGEST: gi|218505093|gb|FG954677.1|FG954677
genomic: TTGCTGCATTTACACATTgtacgttcct ... atatttgcagTGGAAATTCCTTTGGTATCTGTCGGTGATGATGGTAGAGTATTTACTGTTG
EST: GTCTCTATTCGACGCTGCACTAATCTCAGCTGTTGCTGCATTTACACATT TGGAAATTCCTTTGGTATCTGTCGGTGATGATGGTAGAGTATTTACTGTTG
genomic: GTCTCTATTCGACGCTGCACTAATCTCAGCTGTTGCTGCATTTACACATTgtacgttcct ... atatttgcagTGGAAATTCCTTTGGTATCTGTCGGTGATGATGGTAGAGTATTTACTGTTG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GATGTCTATTGTTTGAATGCTGATGGGTCTCTATTCGACGCTGCACTAATCTCAGCTGTTGCTGCATTTACACATTgtacgttccttatttctgatagcttatcttgatttgacatttttcactacttaattactcttcattttgaaatgtaaatatgctattgtaatatgtgcta
- - - - - - - - - - - - - - - - - - - - - - - - - TCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC