1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
AGGTGCAACCCCAGCCTAGCACTGGTAGTTTCAGAGAAGCTACTGTTAGAAGTGTTATTCCTGATCCAGATATTTCTCAAAGCTGCACTGATTCATCAGAgtacgtatactccaactttgttcttggaatgtgatgatggatatccataggggtggttcatttttctctcttggtcattgttaattaagtttgctcattatttctatag
species | Oryza sativa |
transcript | LOC_Os11g13694.1 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: AGTGTTATTCCTGATCCAGATATTTCTCAAAGCTGCACTGATTCATCAGA GATATCAATAACCAAATCAAATAGAGATAATTTGGTCACTTGTTTACTTCCEST: gi|58608309|gb|CK036342.1|CK036342
genomic: AGTGTTATTCCTGATCCAGATATTTCTCAAAGCTGCACTGATTCATCAGAgtacgtatac ... atttctatagGATATCAATAACCAAATCAAATAGAGATAATTTGGTCACTTGTTTACTTCA
EST: AGTGTTATTCCTGATCCAGATATTTCTCAAAGCTGCACTGATTCATCAGA GATATCAATAACCAAATCAAATAGAGATAATTTGGTCACTGGTTTACTTCAEST: gi|58680966|gb|CK069653.1|CK069653
genomic: AGTGTTATTCCTGATCCAGATATTTCTCAAAGCTGCACTGATTCATCAGAgtacgtatac ... atttctatagGATATCAATAACCAAATCAAATAGAGATAATTTGGTCACTTGTTTACTTCA
EST: AGTGTTATTCCTGATCCAGATATTTCTCAAAGCTGCACTGATTCATCAGA GATATCAATAACCAAATCAAATAGAGATAATTTGGTCACTGGTTTACTTCA
genomic: AGTGTTATTCCTGATCCAGATATTTCTCAAAGCTGCACTGATTCATCAGAgtacgtatac ... atttctatagGATATCAATAACCAAATCAAATAGAGATAATTTGGTCACTTGTTTACTTCA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AGGTGCAACCCCAGCCTAGCACTGGTAGTTTCAGAGAAGCTACTGTTAGAAGTGTTATTCCTGATCCAGATATTTCTCAAAGCTGCACTGATTCATCAGAgtacgtatactccaactttgttcttggaatgtgatgatggatatccataggggtggttcatttttctctcttggtcattgttaattaagtttgctcattatttctatag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC