1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
CCGCCCAACTGCAGTGAACCTATCTGATGCTGCAACCAAGCTTCGGAGTTTAGTTTCAAGGACAGCAGAAACTGAGAAAGATGCCAAAGCAATCTTTCAGgtgctattctatagaccaataatttcagtgtatctttcttctcaccatttcatcggtagatataacttacagtaaacatatttattgtgattggtgaatt...
species | Oryza sativa |
transcript | LOC_Os11g11050.1 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: TAGTTTCAAGGACAGCAGAAACTGAGAAAGATGCCAAAGCAATCTTTCAG GCCTACATTGATGCAGCAGAGACCATGCTAGTTGACGATGTGTCAGATAACEST: gi|33680908|gb|CF309147.1|CF309147
genomic: TAGTTTCAAGGACAGCAGAAACTGAGAAAGATGCCAAAGCAATCTTTCAGgtgctattct ... ccacaactagGCCTACATTGATGCAGCAGAGACCATGCTAGTTGACGATGTGTCAGATAAC
EST: TAGTTTCAAGGACAGCAGAAACTGAGAAAGATGCCAAAGCAATCTTTCAG GCCTACATTGATGCAGCAGAGACCATGCTAGTTGACGATGTGTCTGATAACEST: gi|218497233|gb|FG957727.1|FG957727
genomic: TAGTTTCAAGGACAGCAGAAACTGAGAAAGATGCCAAAGCAATCTTTCAGgtgctattct ... ccacaactagGCCTACATTGATGCAGCAGAGACCATGCTAGTTGACGATGTGTCAGATAAC
EST: TAGTTTCAAGGACAGCAGAAACTGAGAAAGATGCCAAAGCAATCTTTCAG GCCTACATTGATGCAGCAGAGACCATGCTAGTTGACGATGTGTCAGATAACEST: gi|9884545|gb|BE607378.1|BE607378
genomic: TAGTTTCAAGGACAGCAGAAACTGAGAAAGATGCCAAAGCAATCTTTCAGgtgctattct ... ccacaactagGCCTACATTGATGCAGCAGAGACCATGCTAGTTGACGATGTGTCAGATAAC
EST: TAGTTTCAAGGACAGCAGAAACTGAGAAAGATGCCAAAGCAATCTTTCAG GCCTACATTGATGCAGCAGAGACCATGCTAGTTGACGATGTGTCAGATAAC
genomic: TAGTTTCAAGGACAGCAGAAACTGAGAAAGATGCCAAAGCAATCTTTCAGgtgctattct ... ccacaactagGCCTACATTGATGCAGCAGAGACCATGCTAGTTGACGATGTGTCAGATAAC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CCGCCCAACTGCAGTGAACCTATCTGATGCTGCAACCAAGCTTCGGAGTTTAGTTTCAAGGACAGCAGAAACTGAGAAAGATGCCAAAGCAATCTTTCAGgtgctattctatagaccaataatttcagtgtatctttcttctcaccatttcatcggtagatataacttacagtaaacatatttattgtgattggtgaatt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA