1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
AGTAGAGGAAAGGATTGAAGCAGCGGACAGGAGGAAGATTGAGGGCAATGAGTATTTCAAAGAAAAGAAGTTTGAGGAGGCCATGCAGCAATATGAAATGgttagttgtccttcttcaactgttgtgagatgattctctaatcgtaatcctctagctcctcctctttacag
species | Oryza sativa |
transcript | LOC_Os11g05090.1 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: AGTATTTCAAAGAAAAGAAGTTTGAGGAGGCCATGCAGCAATATGAAATG GCGATTGCATACATGGGAGATGACTTCATGTTTCAATTGTTCGGGAAATACEST: gi|29687302|gb|CB683577.1|CB683577
genomic: AGTATTTCAAAGAAAAGAAGTTTGAGGAGGCCATGCAGCAATATGAAATGgttagttgtc ... ctctttacagGCGATTGCATACATGGGAGATGACTTCATGTTTCAATTGTTCGGGAAATAC
EST: AAGAAAAGAAGTTTGAGGAGGCCATGCAGCAATATGAAATG GCGATTGCATACATGGGAGATGACTTCATGTTTCAATTGTTCGGGAAATACEST: gi|29663324|gb|CB659599.1|CB659599
genomic: AAGAAAAGAAGTTTGAGGAGGCCATGCAGCAATATGAAATGgttagttgtc ... ctctttacagGCGATTGCATACATGGGAGATGACTTCATGTTTCAATTGTTCGGGAAATAC
EST: AGTATTTCAAAGAAAAGAAGTTTGAGGAGGCCATGCAGCAATATGAAATG GCGATTGCATACATGGGAGATGACTTCATGTTTCAATTGTTCGGGAAATACEST: gi|27546946|gb|CA765208.2|CA765208
genomic: AGTATTTCAAAGAAAAGAAGTTTGAGGAGGCCATGCAGCAATATGAAATGgttagttgtc ... ctctttacagGCGATTGCATACATGGGAGATGACTTCATGTTTCAATTGTTCGGGAAATAC
EST: AGTATTTCAAAGAAAAGAAGTTTGAGGAGGCCATGCAGCAATATGAAATG GCGATTGCATACATGGGAGATGACTTCATGTTTCAATTGTTCGGGAAATACEST: gi|58693730|gb|CK082417.1|CK082417
genomic: AGTATTTCAAAGAAAAGAAGTTTGAGGAGGCCATGCAGCAATATGAAATGgttagttgtc ... ctctttacagGCGATTGCATACATGGGAGATGACTTCATGTTTCAATTGTTCGGGAAATAC
EST: AGTATTTCAAAGAAAAGAAGTTTGAGGAGGCCATGCAGCAATATGAAATG GCGATTGCATACATGGGAGATGACTTCATGTTTCAATTGTTCGGGAAATAC
genomic: AGTATTTCAAAGAAAAGAAGTTTGAGGAGGCCATGCAGCAATATGAAATGgttagttgtc ... ctctttacagGCGATTGCATACATGGGAGATGACTTCATGTTTCAATTGTTCGGGAAATAC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AGTAGAGGAAAGGATTGAAGCAGCGGACAGGAGGAAGATTGAGGGCAATGAGTATTTCAAAGAAAAGAAGTTTGAGGAGGCCATGCAGCAATATGAAATGgttagttgtccttcttcaactgttgtgagatgattctctaatcgtaatcctctagctcctcctctttacag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG