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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CAATAACGCTGGAATCCTGTCCAAGGACTGCATACGCTCCATTGACGGCCTAGAATTGCATTTTGCAACTAATCACATTGgtatgcgaaattgcatatggcattcctcgtgcatctcgatattgcttaattgtggattgattgcttttatgacttgaatgacag

Basic information

species Oryza sativa
transcript LOC_Os10g40030.6
intron # 5
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|29656760|gb|CB653035.1|CB653035
EST:     CATACGCTCCATTGACGGCCTAGAATTGCATTTTGCAACTAATCACATTG                         GCCATTTTCTTCTAACGAATCTTTTACTGGAGAACATGAAGAGCACAAGTA
genomic: CATACGCTCCATTGACGGCCTAGAATTGCATTTTGCAACTAATCACATTGgtatgcgaaa ... tgaatgacagGCCATTTTCTTCTAACGAATCTTTTACTGGAGAACATGAAGAGCACAAGTA
EST: gi|38471413|gb|CF955544.1|CF955544
EST:     CATACGCTCCATTGACGGCCTAGAATTGCATTTTGCAACTAATCACATTG                         GCCATTTTCTTCTAACGAATCTTTTACTGGAGAACATGAAGAGCACAAGTA
genomic: CATACGCTCCATTGACGGCCTAGAATTGCATTTTGCAACTAATCACATTGgtatgcgaaa ... tgaatgacagGCCATTTTCTTCTAACGAATCTTTTACTGGAGAACATGAAGAGCACAAGTA