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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CCGGTATCCATGTGCTGGAGATGGACCTCAGCTCCATGGATTCGGTGAGGAGATTTGCCACCGAGTTTGAGGCTCTGAACCTACCTCTCAACATACTCATgtaagagcaagaatctgaacgcttcttctatatgtactccctcctccgtttgttttagcagatgatgccgtttacatttgacatgacgcttgactattta...

Basic information

species Oryza sativa
transcript LOC_Os10g40020.1
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os10g40020.1 (Oryza sativa), 5'ss of exon 5
lower sequence: GRMZM2G464885_T01 (Zea mays), 5'ss of exon 2
CCGGTATCCATGTGCTGGAGATGGACCTCAGCTCCATGGATTCGGTGAGGAGATTTGCCACCGAGTTTGAGGCTCTGAACCTACCTCTCAACATACTCATgtaagagcaagaatctgaacgcttcttctatatgtactccctcctccgtttgtt-----ttagcagatgatgccgtttacatttgacatgacgcttgactattta-------------
|  | ||  | || |||||| |||||||||||||||| | ||| || |||||||| ||| || | |||||  |||| ||| | ||||||| ||| |||||||||  | |  ||||  |   |||| ||  |    ||| |   | |    |||        |||  |  ||     |   || ||    |  | ||||||   |              
CACGGATTGACGTTCTGGAGCTGGACCTCAGCTCCATAGCTTCCGTAAGGAGATTCGCCTCCAATTTTGACTCTCTAAACTTGCCTCTCAGCATTCTCATgtaa--gtaccaatcctactacttcgtc-gtgc-cactgctatcacgagctgtcaaaagccagcctaaaatcatagtagtatgtgtttggctggttgacttggtgttcttttcgacag

upper sequence: LOC_Os10g40020.1 (Oryza sativa), 5'ss of exon 5
lower sequence: GRMZM2G128577_T01 (Zea mays), 5'ss of exon 2
CCGGTATCCATGTGCTGGAGATGGACCTCAGCTCCATGGATTCGGTGAGGAGATTTGCCACCGAGTTTGAGGCTCTGAACCTACCTCTCAACATACTCATgtaagagcaagaatctgaacgcttcttctatatgtactccctcctccgtttgtt-ttagcagatg--atgccgtttac--atttgacatgacgcttgactattta
|  | ||| | || |||||| |||||||||||||||| | ||| ||||||||||| ||| ||||||| ||  |||| || || || |||||||| |||||||||||      | |  |    |  |||||    ||     |  |  | ||||  ||||| |||   ||   | |  |  ||   | |||||   |    |||  
CAAGAATCGACGTTCTGGAGCTGGACCTCAGCTCCATAGCTTCCGTGAGGAGATTCGCCTCCGAGTTCGACTCTCTCAAACTGCCCCTCAACATTCTCATgtaagaagggcgaacaaa----tctttctagtcttaggttttgtttggattgtcgttagctgatagaatttagctagctaatagtatatgactgatattaattc-