1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
CATTTGGTCAGCAAGgttagttcattctattaactttatttggtttccatcggtctgaagtcctgtgctaatgccaaccttcctttttgtag
species | Oryza sativa |
transcript | LOC_Os10g38980.3 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: AGCCTGCAAGCATTTGGTCAGCAAG GCTGTCCACTTCGCAGCTTACCTACAGACATTGGTATTTGACAATGCTACGEST: gi|27920414|gb|CB096222.1|CB096222
genomic: AGCCTGCAAGCATTTGGTCAGCAAGgttagttcat ... ctttttgtagGCTGTCTACTTCGCAGCTTACCTACAGACATTG-TATTTGACAATGCTACG
EST: AGCCTGCAAGCATTTGGTCAGCAAG GCTGTCTACTTCGCAGCTTACCTACAGACATTGTATTTGACAATGCTACGGEST: gi|58602511|gb|CK013039.1|CK013039
genomic: AGCCTGCAAGCATTTGGTCAGCAAGgttagttcat ... ctttttgtagGCTGTCTACTTCGCAGCTTACCTACAGACATTGTATTTGACAATGCTACGG
EST: AGCCTGCAAGCATTTGGTCAGCAAG GCTGTCTACTTCGCAGCTTACCTACAGACATTGTATTTGACAATGCTACGG
genomic: AGCCTGCAAGCATTTGGTCAGCAAGgttagttcat ... ctttttgtagGCTGTCTACTTCGCAGCTTACCTACAGACATTGTATTTGACAATGCTACGG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CATTTGGTCAGCAAGgttagttcattctattaactttatttggtttccatcggtctgaagtcctgtgctaatgccaaccttcctttttgtag
- - - - AGCAAG