1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
CCCTGAATGCAAAGCTGCCCTTCAGGAGGTAACTAGACTTGTCGATGAACAGCTTCGGTTGGACAGCCGCTCTGTGAAGGTTTTATTTGGAGCAGAGAAGgtaaccccttgtgattgaggacttgggatgtgcattttttacttttgtaacataaaagtacctctagttctacacgatgaatacaatctctctgtttccaggattttcgcatgctttaatccacttttgatttgcag
species | Oryza sativa |
transcript | LOC_Os10g36780.1 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: AGCTTCGGTTGGACAGCCGCTCTGTGAAGGTTTTATTTGGAGCAGAGAAG TTGAAAAATGATGGTGATTTCCTGTTCTTCCTGGCAGATGCGGCGGCCATAEST: gi|58689723|gb|CK078410.1|CK078410
genomic: AGCTTCGGTTGGACAGCCGCTCTGTGAAGGTTTTATTTGGAGCAGAGAAGgtaacccctt ... tgatttgcagTTGAAAAATGATGGTGATTTCCTGTTCTTCCTGGCAGATGCGGCGGCCATA
EST: CTTCGGTTGGACAGCCGCTCTGTGAAGGCTTTATTTGGAGCAGAGAAG TTGAAAAATGATGGTGATTTCCTGTTCTTCCTGGCAGATGCGGCGGCCATA
genomic: CTTCGGTTGGACAGCCGCTCTGTGAAGGTTTTATTTGGAGCAGAGAAGgtaacccctt ... tgatttgcagTTGAAAAATGATGGTGATTTCCTGTTCTTCCTGGCAGATGCGGCGGCCATA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CCCTGAATGCAAAGCTGCCCTTCAGGAGGTAACTAGACTTGTCGATGAACAGCTTCGGTTGGACAGCCGCTCTGTGAAGGTTTTATTTGGAGCAGAGAAGgtaaccccttgtgattgaggacttgggatgtgcattttttacttttgtaacataaaagtacctctagttctacacgatgaatacaatctctctgtttccaggattttcgcatgctttaatccacttttgatttgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG