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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCATTGGCACGTACCAGGACTGGTGTGAAGCTTTCTCGACGTATCCCAGAACCTACGACCTGTTGCATGCTGACAATTTGTTTAGCATCTATCAGGACAGgtgagaaacttttatactacatatcatttctgctagctcttagttctgcttaaccatgttcaagctgccaccatttggttgtgcattacactggacaccc...

Basic information

species Oryza sativa
transcript LOC_Os10g36690.3
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os10g36690.3 (Oryza sativa), 5'ss of exon 5
lower sequence: GRMZM2G114570_T01 (Zea mays), 5'ss of exon 5
TCATTGGCACGTACCAGGACTGGTGTGAAGCTTTCTCGACGTATCCCAGAACCTACGACCTGTTGCATGCTGACAATTTGTTTAGCATCTATCAGGACAGgtgagaaacttttatactaca-----tatcatttctgctagctcttagtt------ctgcttaaccatgttcaagctgccaccatttggttgtgcattacactggacaccc---
|||| |||||||||||||||||||| |||||||||||||||||||| ||||| || |||||  |||||||||||||| ||||||||||||| || ||||||| ||  |  | | | || |      |||| |   | |||     | |         |  || || |  | || ||   ||  |   | || ||   | | ||  ||   |   
TCATCGGCACGTACCAGGACTGGTGCGAAGCTTTCTCGACGTATCCAAGAACATATGACCTCCTGCATGCTGACAATCTGTTTAGCATCTACCAAGACAGgtaagggaactatgtgcttcgatctttatcttaaatactactatatggcaagcaaatttttttacaacatacaggccatcatgacgcg-ttttgttatcccctaaactttccag

upper sequence: LOC_Os10g36690.3 (Oryza sativa), 5'ss of exon 5
lower sequence: Vv02s0025g03200.t01 (Vitis vinifera), 5'ss of exon 4
TCATTGGCACGTACCAGGACTGGTGTGAAGCTTTCTCGACGTATCCCAGAACCTACGACCTGTTGCATGCTGACAATTTGTTTAGCATCTATCAGGACAGgtgagaaacttttatactacatatcatttctgctagctcttagttctgcttaaccatgttcaagctgccaccatttggttgtgcattacactggacaccc
||||||| || || || ||||||||||| || |||||||| ||||| ||||| || || ||| | |||||   |||| |||| ||||| ||||||||||||| | ||  |   | |||   |   ||||             |||||||||||| || ||   | |   |   | || |  |   |  ||          
TCATTGGGACATATCATGACTGGTGTGAGGCCTTCTCGACATATCCAAGAACATATGATCTGATCCATGCAAGCAATGTGTTCAGCATATATCAGGACAGgt-aaaacttgagacactcagtgcaattttgat---------gttctgcttaacaatcttgtggtta--aatgtgtgttcatatgt-gcatgaag-----

upper sequence: LOC_Os10g36690.3 (Oryza sativa), 5'ss of exon 5
lower sequence: EFJ32180 (Selaginella moellendorffii), 5'ss of exon 4
TCATTGGCACGTACCAGGACTGGTGTGAAGCTTTCTCGACGTATCCCAGAACCTACGACCTGTTGCATGCTGACAATTTGTTTAGCATCTATCAGGACAGgtgagaaacttttatactacatatcatttctgctagctcttagttctgcttaaccatgtt-caagctgccaccatttggttgtgcattacactggacaccc
|||| |||  |||||| |||||||| || || ||||||||||||||||| || |||||| || | || ||||| ||  | || ||| ||||  ||||| ||||||    ||   | ||   | | |  |      | ||| |    ||  |     ||||   ||                                    
TCATCGGCGTGTACCACGACTGGTGCGAGGCATTCTCGACGTATCCCAGGACTTACGACTTGATCCACGCTGATAACGTCTTCAGCCTCTACAAGGACCGgtgag----ttgattgctcggttttaacttaatgtgttctaa--cgtggctgcttgtgttattag------------------------------------

upper sequence: LOC_Os10g36690.3 (Oryza sativa), 5'ss of exon 5
lower sequence: EFJ21569 (Selaginella moellendorffii), 5'ss of exon 4
TCATTGGCACGTACCAGGACTGGTGTGAAGCTTTCTCGACGTATCCCAGAACCTACGACCTGTTGCATGCTGACAATTTGTTTAGCATCTATCAGGACAGgtgagaaacttttatactacatatcatttctgctagctcttagttctgcttaaccatgttcaagctgccaccatttggttgtgcattacactggacaccc
|||||||   |||||| |||||||| ||||| ||||||||||| ||||| || |||||| |  | |||||  ||    |||||||||| || |||  |  | |  ||  | |  |    | ||   | |||      ||| |     |||      | |||  || |                                 
TCATTGGGGTGTACCACGACTGGTGCGAAGCATTCTCGACGTACCCCAGGACTTACGACTTCATCCATGCAAACCGGGTGTTTAGCATGTA-CAGAGC--GCGgtaagttctcgtgaagcttacagtctct-tcgtttctcaa----gctggtttcttttctggcag---------------------------------

upper sequence: LOC_Os10g36690.3 (Oryza sativa), 5'ss of exon 5
lower sequence: EFJ23945 (Selaginella moellendorffii), 5'ss of exon 5
TCATTGGCACGTACCAGGACTGGTGTGAAGCTTTCTCGACGTATCCCAGAACCTACGACCTGTTGCATGCTGACAATTTGTTTAGCATCTATCAGGACAGgtgagaaacttttatactacatatcatttctgctagctcttagttctgcttaaccatgttcaagctgccaccatttggttgtgcattacactggacaccc
|||| ||   |||||| |||||||| ||||| ||||||||||| ||||| || |||||| |  | |||||  ||    |||||||||| || |||  |  | |  |   | |  |    | ||   |||||      ||| |     |||      | |||  || |                                 
TCATCGGGGTGTACCACGACTGGTGCGAAGCATTCTCGACGTACCCCAGGACTTACGACTTCATCCATGCAAACCGGGTGTTTAGCATGTA-CAGAGC--GCGgtaggttctcgtgaagcttacagtttct-tcgtttctcaa----gctggtttcttttctggcag---------------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|88198355|gb|CI198205.1|CI198205
EST:     CTATCAGGACAG                         GTGTGACATAACCAACATCCTCTTGGAGATGGACAGGATCCTGAGGCCCGA
genomic: CTATCAGGACAGgtgagaaact ... aacattgcagGTGTGACATAACCAACATCCTCTTGGAGATGGACAGGATCCTGAGGCCCGA
EST: gi|88902474|gb|CI088012.1|CI088012
EST:     AATTTGTTTAGCATCTATCAGGACAG                         GTGTGACATAACCAACATCCTCTTGGAGATGGACAGGATCCTGAGGCCCGA
genomic: AATTTGTTTAGCATCTATCAGGACAGgtgagaaact ... aacattgcagGTGTGACATAACCAACATCCTCTTGGAGATGGACAGGATCCTGAGGCCCGA
EST: gi|87042149|gb|CI194773.1|CI194773
EST:     ACCTACGACCTGTTGCATGCTGACAATTTGTTTAGCATCTATCAGGACAG                         GTGTGACATAACCAACATCCTCTTGGAGATGGACAGGATCCTGAGGCCCGA
genomic: ACCTACGACCTGTTGCATGCTGACAATTTGTTTAGCATCTATCAGGACAGgtgagaaact ... aacattgcagGTGTGACATAACCAACATCCTCTTGGAGATGGACAGGATCCTGAGGCCCGA
EST: gi|86867697|gb|CI342672.1|CI342672
EST:     CCTACGACCTGTTGCATGGCTGACAATTTGTTTAGCATCTATCAGGACAG                         GTGTGACATAACCAACATCCTCTTGGAGATGGACAGGATCCTGAGGCCCGA
genomic: CCTACGACCTGTTGCAT-GCTGACAATTTGTTTAGCATCTATCAGGACAGgtgagaaact ... aacattgcagGTGTGACATAACCAACATCCTCTTGGAGATGGACAGGATCCTGAGGCCCGA
EST: gi|44670654|gb|CR284088.1|CR284088
EST:     ACCTACGACCTGTTGCATGCTGACAATTTGTTTAGCATCTATCAGGACAG                         GTGTGACATAACCAACATCCTCTTGGAGATGGACAGGATCCTGAGGCCCGA
genomic: ACCTACGACCTGTTGCATGCTGACAATTTGTTTAGCATCTATCAGGACAGgtgagaaact ... aacattgcagGTGTGACATAACCAACATCCTCTTGGAGATGGACAGGATCCTGAGGCCCGA
EST: gi|300215909|gb|HO088535.1|HO088535
EST:     ACCTACGACCTGTTGCATGCTGACAATTTGTTTAGCATCTATCAGGACAG                         GTGTGACATAACCAACATCCTCTTGGAGATGGACAGGATCCTGAGGCCCGA
genomic: ACCTACGACCTGTTGCATGCTGACAATTTGTTTAGCATCTATCAGGACAGgtgagaaact ... aacattgcagGTGTGACATAACCAACATCCTCTTGGAGATGGACAGGATCCTGAGGCCCGA
EST: gi|3763523|gb|AU030275.1|AU030275
EST:     ACCTACGACCTNTTGCATGCTGACAATTTGTTTAGCATCTATCAGGACAG                         GTGTGACATAACCAACATCCTCTTGGAGATGGACAGGATCCTGAGGCCCGA
genomic: ACCTACGACCTGTTGCATGCTGACAATTTGTTTAGCATCTATCAGGACAGgtgagaaact ... aacattgcagGTGTGACATAACCAACATCCTCTTGGAGATGGACAGGATCCTGAGGCCCGA
EST: gi|86429687|gb|CI076368.1|CI076368
EST:     ACCTACGACCTGTTGCATGCTGACAATTTGTTTAGCATCTATCAGGACAG                         GTGTGACATAACCAACATCCTCTTGGAGATGGACAGGATCCTGAGGCCCGA
genomic: ACCTACGACCTGTTGCATGCTGACAATTTGTTTAGCATCTATCAGGACAGgtgagaaact ... aacattgcagGTGTGACATAACCAACATCCTCTTGGAGATGGACAGGATCCTGAGGCCCGA
EST: gi|88197450|gb|CI196757.1|CI196757
EST:     ACGTACGACCTGTTGCATGCTGACAATTTGTTTAGCATCTATCAGGACAG                         GTGTGACATAACCAACATCCTCTTGGAGATGGACAGGATCCTGAGGCCCGA
genomic: ACCTACGACCTGTTGCATGCTGACAATTTGTTTAGCATCTATCAGGACAGgtgagaaact ... aacattgcagGTGTGACATAACCAACATCCTCTTGGAGATGGACAGGATCCTGAGGCCCGA
EST: gi|87036370|gb|CI190992.1|CI190992
EST:     GCTGACAATTTGTTTAGCATCTATCAGGACAG                         GTGTGACATAACCAACATCCTCTTGGAGATGGACAGGATCCTGAGGCCCGA
genomic: GCTGACAATTTGTTTAGCATCTATCAGGACAGgtgagaaact ... aacattgcagGTGTGACATAACCAACATCCTCTTGGAGATGGACAGGATCCTGAGGCCCGA
EST: gi|9865762|gb|AU101512.1|AU101512
EST:     ACCTACGACCTGTTGCATGCTGACAATTTGTTTAGCATCTATCAGGACAG                         GTGTGACATAACCAACATCCTCTTGGAGATGGACAGGATCCTGAGGCCCGA
genomic: ACCTACGACCTGTTGCATGCTGACAATTTGTTTAGCATCTATCAGGACAGgtgagaaact ... aacattgcagGTGTGACATAACCAACATCCTCTTGGAGATGGACAGGATCCTGAGGCCCGA
EST: gi|89181260|gb|CI112766.1|CI112766
EST:     ACCTACGACCTGTTGCATGCTGACAATTTGTTTAGCATCTATCAGGACAG                         GTGTGACATAACCAACATCCTCTTGGAGATGGACAGGATCCTGAGGCCCGA
genomic: ACCTACGACCTGTTGCATGCTGACAATTTGTTTAGCATCTATCAGGACAGgtgagaaact ... aacattgcagGTGTGACATAACCAACATCCTCTTGGAGATGGACAGGATCCTGAGGCCCGA
EST: gi|89166580|gb|CI103866.1|CI103866
EST:     ACCTACGACCTGTTGCATGCTGACAATTTGTTTAGCATCTATCAGGACAG                         GTGTGACATAACCAACATCCTCTTGGAGATGGACAGGATCCTGAGGCCCGA
genomic: ACCTACGACCTGTTGCATGCTGACAATTTGTTTAGCATCTATCAGGACAGgtgagaaact ... aacattgcagGTGTGACATAACCAACATCCTCTTGGAGATGGACAGGATCCTGAGGCCCGA
EST: gi|88236106|gb|CI235308.1|CI235308
EST:     ACCTACGACCTGTAGCATGCTGACAATTTGTTTAGCATCTATCAGGACAG                         GTGTGACATAACCAACATCCTCTTGGAGATGGACAGGATCCTGAGGCCCGA
genomic: ACCTACGACCTGTTGCATGCTGACAATTTGTTTAGCATCTATCAGGACAGgtgagaaact ... aacattgcagGTGTGACATAACCAACATCCTCTTGGAGATGGACAGGATCCTGAGGCCCGA
EST: gi|89166195|gb|CI103285.1|CI103285
EST:     ACCTACGACCTGTTGCATGCTGACAATTTGTTTAGCATCTATCAGGACAG                         GTGTGACATAACCAACATCCTCTTGGAGATGGACAGGATCCTGAGGCCCGA
genomic: ACCTACGACCTGTTGCATGCTGACAATTTGTTTAGCATCTATCAGGACAGgtgagaaact ... aacattgcagGTGTGACATAACCAACATCCTCTTGGAGATGGACAGGATCCTGAGGCCCGA
EST: gi|87037065|gb|CI191687.1|CI191687
EST:     ACCTACGACCTGTTGCATGCTGACAATTTGTTTAGCATCTATCAGGACAG                         GTGTGACATAACCAACATCCTCTTGGAGATGGACAGGATCCTGAGGCCCGA
genomic: ACCTACGACCTGTTGCATGCTGACAATTTGTTTAGCATCTATCAGGACAGgtgagaaact ... aacattgcagGTGTGACATAACCAACATCCTCTTGGAGATGGACAGGATCCTGAGGCCCGA
EST: gi|29679561|gb|CB675836.1|CB675836
EST:     ACCTACGACCTGTTGCATGCTGACAATTTGTTTAGCATCTATCAGGACAG                         GTGTGACATAACCAACATCCTCTTGGAGATGGACAGGATCCTGAGGCCCGA
genomic: ACCTACGACCTGTTGCATGCTGACAATTTGTTTAGCATCTATCAGGACAGgtgagaaact ... aacattgcagGTGTGACATAACCAACATCCTCTTGGAGATGGACAGGATCCTGAGGCCCGA
EST: gi|87021158|gb|CI271965.1|CI271965
EST:     ACCTACGACCTGTTGCATGCTGACAATTTGTTTAGCATCTATCAGGACAG                         GTGTGACATAACCAACATCCTCTTGGAGATGGACAGGATCCTGAGGCCCGA
genomic: ACCTACGACCTGTTGCATGCTGACAATTTGTTTAGCATCTATCAGGACAGgtgagaaact ... aacattgcagGTGTGACATAACCAACATCCTCTTGGAGATGGACAGGATCCTGAGGCCCGA
EST: gi|86524495|gb|CI164701.1|CI164701
EST:     ACCTACGACCTGTTGCATGCTGACAATTTGTTTAGCATCTATCAGGACAG                         GTGTGACATAACCAACATCCTCTTGGAGATGGACAGGATCCTGAGGCCCGA
genomic: ACCTACGACCTGTTGCATGCTGACAATTTGTTTAGCATCTATCAGGACAGgtgagaaact ... aacattgcagGTGTGACATAACCAACATCCTCTTGGAGATGGACAGGATCCTGAGGCCCGA
EST: gi|88908184|gb|CI090779.1|CI090779
EST:     ACCTACGACCTGTTGCATGCTGACAATTTGTTTAGCATCTATCAGGACAG                         GTGTGACATAACCAACATCCTCTTGGAGATGGACAGGATCCTGAGGCCCGA
genomic: ACCTACGACCTGTTGCATGCTGACAATTTGTTTAGCATCTATCAGGACAGgtgagaaact ... aacattgcagGTGTGACATAACCAACATCCTCTTGGAGATGGACAGGATCCTGAGGCCCGA
EST: gi|89193118|gb|CI050416.1|CI050416
EST:     ACCTACGACCTGTTGCATGCTGACAATTTGTTTAGCATCTATCAGGACAG                         GTGTGACATAACCAACATCCTCTTGGAGATGGACAGGATCCTGAGGCCCGA
genomic: ACCTACGACCTGTTGCATGCTGACAATTTGTTTAGCATCTATCAGGACAGgtgagaaact ... aacattgcagGTGTGACATAACCAACATCCTCTTGGAGATGGACAGGATCCTGAGGCCCGA
EST: gi|86822663|gb|CI358131.1|CI358131
EST:     TTGTTTAGCATCTATCAGGACAG                         GTTTGACATAACCAACATCCTCTTGGAGATGGACAGGATCCTGAGGCCCGA
genomic: TTGTTTAGCATCTATCAGGACAGgtgagaaact ... aacattgcagGTGTGACATAACCAACATCCTCTTGGAGATGGACAGGATCCTGAGGCCCGA
EST: gi|88961821|gb|CI096974.1|CI096974
EST:     ACCTACGACCTGTTGCATGCTGACAATTTGTTTAGCATCTATCAGGACAG                         GTGTGACATAACCAACATCCTCTTGGAGATGGACAGGATCCTGAGGCCCGA
genomic: ACCTACGACCTGTTGCATGCTGACAATTTGTTTAGCATCTATCAGGACAGgtgagaaact ... aacattgcagGTGTGACATAACCAACATCCTCTTGGAGATGGACAGGATCCTGAGGCCCGA
EST: gi|3107726|gb|D43466.1|D43466
EST:     ACCTACGACCTGTTGCATGCTGACAATTTGTTTAGCATCTATCAGGACAG                         GTGTGACATAA
genomic: ACCTACGACCTGTTGCATGCTGACAATTTGTTTAGCATCTATCAGGACAGgtgagaaact ... aacattgcagGTGTGACATAA
EST: gi|117252136|gb|CT844318.1|CT844318
EST:     ACCTACGACCTGTTGCATGCTGACAATTTGTTTAGCATCTATCAGGACAG                         GTGTGACATAACCAACATCCTCTTGGAGATGGACAGGATCCTGAGGCCCGA
genomic: ACCTACGACCTGTTGCATGCTGACAATTTGTTTAGCATCTATCAGGACAGgtgagaaact ... aacattgcagGTGTGACATAACCAACATCCTCTTGGAGATGGACAGGATCCTGAGGCCCGA
EST: gi|88835791|gb|CI370896.1|CI370896
EST:     CATCTATCAGGACA-                         GTGTGACATAACCAACATCCTC-TGGAGATGGACAGGATCCTGAGGCCCGA
genomic: CATCTATCAGGACAGgtgagaaact ... aacattgcagGTGTGACATAACCAACATCCTCTTGGAGATGGACAGGATCCTGAGGCCCGA
EST: gi|87039609|gb|CI194231.1|CI194231
EST:     ACCTACGACCTGTTGCATGCTGACAATTTGTTTAGCATCTATCAGGACAG                         GTGTGACATAACCAACATCCTCTTGGAGATGGACAGGATCCTGAGGCCCGA
genomic: ACCTACGACCTGTTGCATGCTGACAATTTGTTTAGCATCTATCAGGACAGgtgagaaact ... aacattgcagGTGTGACATAACCAACATCCTCTTGGAGATGGACAGGATCCTGAGGCCCGA
EST: gi|33798161|gb|CF324939.1|CF324939
EST:     ACCTACGACCTGTTGCATGCTGACAATTTGTTTAGCATCTATCAGGACAG                         GTGTGACATAACCAACATCCTCTTGGAGATGGACAGGATCCTGAGGCCCGA
genomic: ACCTACGACCTGTTGCATGCTGACAATTTGTTTAGCATCTATCAGGACAGgtgagaaact ... aacattgcagGTGTGACATAACCAACATCCTCTTGGAGATGGACAGGATCCTGAGGCCCGA
EST: gi|88253499|gb|CI352125.1|CI352125
EST:     ATGCTGACAATTTGTTTAGCATCTATCAGGACAG                         GTGTGACATAACCAACATCCTCTTGGAGATGGACAGGATCCTGAGGCCCGA
genomic: ATGCTGACAATTTGTTTAGCATCTATCAGGACAGgtgagaaact ... aacattgcagGTGTGACATAACCAACATCCTCTTGGAGATGGACAGGATCCTGAGGCCCGA
EST: gi|88235588|gb|CI234642.1|CI234642
EST:     ACCTACGACCTGTTGCATGCTGACAATTTGTTTAGCATCTATCAGGACAG                         GTGTGACATAACCAACATCCTCTTGGAGATGGACAGGATCCTGAGGCCCGA
genomic: ACCTACGACCTGTTGCATGCTGACAATTTGTTTAGCATCTATCAGGACAGgtgagaaact ... aacattgcagGTGTGACATAACCAACATCCTCTTGGAGATGGACAGGATCCTGAGGCCCGA
EST: gi|88846485|gb|CI373253.1|CI373253
EST:     AATTTGTTTAGCATCTATCAGGACAG                         GTGTGACATAACCAACATCCTCTTGGAGATGGACAGGATCCTGAGGCCCGA
genomic: AATTTGTTTAGCATCTATCAGGACAGgtgagaaact ... aacattgcagGTGTGACATAACCAACATCCTCTTGGAGATGGACAGGATCCTGAGGCCCGA
EST: gi|86498946|gb|CI141579.1|CI141579
EST:     TAGCATCTATCAGGACAG                         GTGTGACATAACCAACATCCTCTTGGAGATGGACAGGATCCTGAGGCCCGA
genomic: TAGCATCTATCAGGACAGgtgagaaact ... aacattgcagGTGTGACATAACCAACATCCTCTTGGAGATGGACAGGATCCTGAGGCCCGA
EST: gi|87016295|gb|CI271706.1|CI271706
EST:     ACCTACGACCTGTTGCATGCTGACAATTTGTTTAGCATCTATCAGGACAG                         GTGTGACATAACCAACATCCTCTTGGAGATGGACAGGATCCTGAGGCCCGA
genomic: ACCTACGACCTGTTGCATGCTGACAATTTGTTTAGCATCTATCAGGACAGgtgagaaact ... aacattgcagGTGTGACATAACCAACATCCTCTTGGAGATGGACAGGATCCTGAGGCCCGA
EST: gi|86433537|gb|CI093880.1|CI093880
EST:     ACTTACGACCTGTTGCATGCTGACAATTTGTTTAGCATCTATCAGGACAG                         GTGTGACATAACCAACATCCTCTTGGAGATGGACAGGATCCTGAGGCCCGA
genomic: ACCTACGACCTGTTGCATGCTGACAATTTGTTTAGCATCTATCAGGACAGgtgagaaact ... aacattgcagGTGTGACATAACCAACATCCTCTTGGAGATGGACAGGATCCTGAGGCCCGA
EST: gi|87029335|gb|CI250268.1|CI250268
EST:     ACCTACGACCTGTTGCATGCTGACAATTTGTTTAGCATCTATCAGGACAG                         GTGTGACATAACCAACATCCTCTTGGAGATGGACAGGATCCTGAGGCCCGA
genomic: ACCTACGACCTGTTGCATGCTGACAATTTGTTTAGCATCTATCAGGACAGgtgagaaact ... aacattgcagGTGTGACATAACCAACATCCTCTTGGAGATGGACAGGATCCTGAGGCCCGA
EST: gi|11233307|gb|AU164726.1|AU164726
EST:     CATCTATCAGGACAG                         NTGTGACATAACCAACNTCCTCTTGGAGATGGACAGGATCCTGAGGCCCGA
genomic: CATCTATCAGGACAGgtgagaaact ... aacattgcagGTGTGACATAACCAACATCCTCTTGGAGATGGACAGGATCCTGAGGCCCGA
EST: gi|88234499|gb|CI234348.1|CI234348
EST:     ACCTACGACCTGTTGCATGCTGACAATTTGTTTAGCATCTATCAGGACAG                         GTGTGACATAACCAACATCCTCTTGGAGATGGACAGGATCCTGAGGCCCGA
genomic: ACCTACGACCTGTTGCATGCTGACAATTTGTTTAGCATCTATCAGGACAGgtgagaaact ... aacattgcagGTGTGACATAACCAACATCCTCTTGGAGATGGACAGGATCCTGAGGCCCGA
EST: gi|88197397|gb|CI196704.1|CI196704
EST:     ACCTACGACCTGTTGCATGCTGACAATTTGTTTAGCATCTATCAGGACAG                         GCGTGACATAACCAACATCCTTTTGGAGATGGACAGGATCCTGAGGCCCGA
genomic: ACCTACGACCTGTTGCATGCTGACAATTTGTTTAGCATCTATCAGGACAGgtgagaaact ... aacattgcagGTGTGACATAACCAACATCCTCTTGGAGATGGACAGGATCCTGAGGCCCGA
EST: gi|58602244|gb|CK012772.1|CK012772
EST:     ACCTACGACCTGTTGCATGCTGACAATTTGTTTAGCATCTATCAGGACAG                         GTGTGACATAACCAAC
genomic: ACCTACGACCTGTTGCATGCTGACAATTTGTTTAGCATCTATCAGGACAGgtgagaaact ... aacattgcagGTGTGACATAACCAAC

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
TCATTGGCACGTACCAGGACTGGTGTGAAGCTTTCTCGACGTATCCCAGAACCTACGACCTGTTGCATGCTGACAATTTGTTTAGCATCTATCAGGACAGgtgagaaacttttatactacatatcatttctgctagctcttagttctgcttaaccatgttcaagctgccaccatttggttgtgcattacactggacaccc

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG