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AATGGATTTAAGGCGTGGTATTTCAATGGCTGTTGATGCTGTTGTAACTAACCTAAAGGGCATGGCTAGAATGATCAGCACATCAGAGGAAATAGCTCAGgtaatacttgtgattcattgcagatctcattatgtgtttgacttgtttcttaatcttaatctgttactaagttcttatgttcatatataaag
species | Oryza sativa |
transcript | LOC_Os10g32550.1 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: ACCTAAAGGGCATGGCTAGAATGATCAGCACATCAGAGGAAATAGCTCAG GTGGGCACAATATCAGCAAATGGGGAAAGGGAAATTGGTGAGCTTATTGCAEST: gi|58685403|gb|CK074090.1|CK074090
genomic: ACCTAAAGGGCATGGCTAGAATGATCAGCACATCAGAGGAAATAGCTCAGgtaatacttg ... atatataaagGTGGGCACAATATCAGCAAATGGGGAAAGGGAAATTGGTGAGCTTATTGCA
EST: ACCTAAAGGGCATGGCTAGAATGATCAGCACATCAGAGGAAATAGCTCAG GTGGGCACAATATCAGCAAATGGGGAAAGGGAAATTGGTGAGCTTATTGCAEST: gi|58663314|gb|CK052000.1|CK052000
genomic: ACCTAAAGGGCATGGCTAGAATGATCAGCACATCAGAGGAAATAGCTCAGgtaatacttg ... atatataaagGTGGGCACAATATCAGCAAATGGGGAAAGGGAAATTGGTGAGCTTATTGCA
EST: GCACATCAGAGGAAATAGCTCAG GTGGGCACAATATCAGCAAATGGGGAAAGGGAAATTGGTGAGCTTATTGCAEST: gi|29632103|gb|CB637112.1|CB637112
genomic: GCACATCAGAGGAAATAGCTCAGgtaatacttg ... atatataaagGTGGGCACAATATCAGCAAATGGGGAAAGGGAAATTGGTGAGCTTATTGCA
EST: ACCTAAAGGGCATGGCTAGAATGATCAGCACATCAGAGGAAATAGCTCAG GTGGGCACAATATCAGCAAATGEST: gi|29627179|gb|CB632190.1|CB632190
genomic: ACCTAAAGGGCATGGCTAGAATGATCAGCACATCAGAGGAAATAGCTCAGgtaatacttg ... atatataaagGTGGGCACAATATCAGCAAATG
EST: ACCTAAAGGGCATGGCTAGAATGATCAGCACATCAGAGGAAATAGCTCAG GTGGGCACAATATCAGCAAATGGGGAAAGGGAAATTGGTGAGCTTATTGCAEST: gi|58691748|gb|CK080435.1|CK080435
genomic: ACCTAAAGGGCATGGCTAGAATGATCAGCACATCAGAGGAAATAGCTCAGgtaatacttg ... atatataaagGTGGGCACAATATCAGCAAATGGGGAAAGGGAAATTGGTGAGCTTATTGCA
EST: ACCTAAAGGGCATGGCTAGAATGATCAGCACATCAGAGGAAATAGCTCAG GTGGGCACAATATCAGCAAATGGGGAAAGGGAAATTGGTGAGCTTATTGCA
genomic: ACCTAAAGGGCATGGCTAGAATGATCAGCACATCAGAGGAAATAGCTCAGgtaatacttg ... atatataaagGTGGGCACAATATCAGCAAATGGGGAAAGGGAAATTGGTGAGCTTATTGCA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AATGGATTTAAGGCGTGGTATTTCAATGGCTGTTGATGCTGTTGTAACTAACCTAAAGGGCATGGCTAGAATGATCAGCACATCAGAGGAAATAGCTCAGgtaatacttgtgattcattgcagatctcattatgtgtttgacttgtttcttaatcttaatctgttactaagttcttatgttcatatataaag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA