1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
TGGAGCAGTCATGCTACGGAGAAAATTTTACCCTGCTGCTATCAAATATCTACAGCAAGCAATCCAAAAATGGGATAGGGATGAGCAAGATCTTGCACAGgtcagatatcctcaacatacaatatcctgaaatctagccaatagaattcttactgtcttatcatgtttcatatctacaaattgatgctgttgcaaaaaga...
species | Oryza sativa |
transcript | LOC_Os10g32300.1 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: TACAGCAAGCAATCCAAAAATGGGATAGGGATGAGCAAGATCTTGCACAG GTATACAATGCCCTGGGAGTCAGCTACAAGCGAGATAACAAACTTTGACAAEST: gi|55409402|gb|CV721778.1|CV721778
genomic: TACAGCAAGCAATCCAAAAATGGGATAGGGATGAGCAAGATCTTGCACAGgtcagatatc ... tgtctgtcagGTATACAATGCCCTGGGAGTCAGCTACAAGCGAGATAACAAACTT-GACAA
EST: TACAGCAAGCAATCCAAAAATGGGATAGGGATGAGCAAGATCTTGCACAG GTATACAATGCCCTGGGAGTCAGCTACAAGCGAGATAACAAACTTGACAAGEST: gi|702589|gb|D48880.1|D48880
genomic: TACAGCAAGCAATCCAAAAATGGGATAGGGATGAGCAAGATCTTGCACAGgtcagatatc ... tgtctgtcagGTATACAATGCCCTGGGAGTCAGCTACAAGCGAGATAACAAACTTGACAAG
EST: TACAGCAAGCAATCCAAAAATGGGATAGGGATGAGCAAGATCTTGCACAG GTATACAATGCCCTGGGAGTCAGCTACAAGCGAGATAACAAACTTGACAAG
genomic: TACAGCAAGCAATCCAAAAATGGGATAGGGATGAGCAAGATCTTGCACAGgtcagatatc ... tgtctgtcagGTATACAATGCCCTGGGAGTCAGCTACAAGCGAGATAACAAACTTGACAAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TGGAGCAGTCATGCTACGGAGAAAATTTTACCCTGCTGCTATCAAATATCTACAGCAAGCAATCCAAAAATGGGATAGGGATGAGCAAGATCTTGCACAGgtcagatatcctcaacatacaatatcctgaaatctagccaatagaattcttactgtcttatcatgtttcatatctacaaattgatgctgttgcaaaaaga
- - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA