1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
TCTTCTTTGCTACTTCACAGACTAGACATCCAAGGTACAATGGGGAAAACTTGGAGAAGAATAAAGTTTTCTACACACGAATTGAAGAGCTTGCCACCAAgtatggctgctcccctgctcaacttgctctctcctgggttcttcatcaaggggatgatgttgttccaatccctggtaatgtgttaaacatatttagtacg...
species | Oryza sativa |
transcript | LOC_Os10g28320.3 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: TTGGAGAAGAATAAAGTTTTCTACACACGAATTGAAGAGCTTGCCACCAA GCACAACAAAAGTGAAGAACCTTGATGATAACATTGGTGCTGTAAAGGTAAEST: gi|88510328|gb|CI437834.1|CI437834
genomic: TTGGAGAAGAATAAAGTTTTCTACACACGAATTGAAGAGCTTGCCACCAAgtatggctgc ... ttgaatttagGCACAACAAAAGTGAAGAACCTTGATGATAACATTGGTGCTGTAAAGGTAA
EST: GGAGAAGAATAAAGTTTTCTACACACGAATTGAAGAGCTTGCCACCAA GCACAACAAAAGTGAAGAACCTTGATGATAACATTGGTGCTGTAAAGGTAAEST: gi|88509852|gb|CI437358.1|CI437358
genomic: GGAGAAGAATAAAGTTTTCTACACACGAATTGAAGAGCTTGCCACCAAgtatggctgc ... ttgaatttagGCACAACAAAAGTGAAGAACCTTGATGATAACATTGGTGCTGTAAAGGTAA
EST: TTGGAGAAGAATAAAGTTTTCTACACACGAATTGAAGAGCTTGCCACCAA GCACAACAAAAGTGAAGAACCTTGATGATAACATTGGTGCTGTAAAGGTAAEST: gi|88470079|gb|CI407350.1|CI407350
genomic: TTGGAGAAGAATAAAGTTTTCTACACACGAATTGAAGAGCTTGCCACCAAgtatggctgc ... ttgaatttagGCACAACAAAAGTGAAGAACCTTGATGATAACATTGGTGCTGTAAAGGTAA
EST: CACGAATTGAAGAGCTTGCCACCAA GCACAACAAAAGTGAAGAACCTTGATGATAACATTGGTGCTGTAAAGGTAAEST: gi|88510326|gb|CI437832.1|CI437832
genomic: CACGAATTGAAGAGCTTGCCACCAAgtatggctgc ... ttgaatttagGCACAACAAAAGTGAAGAACCTTGATGATAACATTGGTGCTGTAAAGGTAA
EST: TGGAGAAGAATAAAGTTTTCTACACACGAATTGAAGAGCTTGCCACCAA GCACAACAAAAGTGAAGAACCTTGATGATAACATTGGTGCTGTAAAGGTAAEST: gi|88510476|gb|CI437982.1|CI437982
genomic: TGGAGAAGAATAAAGTTTTCTACACACGAATTGAAGAGCTTGCCACCAAgtatggctgc ... ttgaatttagGCACAACAAAAGTGAAGAACCTTGATGATAACATTGGTGCTGTAAAGGTAA
EST: TTGGAGAAGAATAAAGTTTTCTACACACGAATTGAAGAGCTTGCCACCAA GCACAACAAAAGTGAAGAACCTTGATGATAACATTGGTGCTGTAAAGGTAAEST: gi|88486892|gb|CI424163.1|CI424163
genomic: TTGGAGAAGAATAAAGTTTTCTACACACGAATTGAAGAGCTTGCCACCAAgtatggctgc ... ttgaatttagGCACAACAAAAGTGAAGAACCTTGATGATAACATTGGTGCTGTAAAGGTAA
EST: TTGGAGAAGAATAAAGTTTTCTACACACGAATTGAAGAGCTTGCCACCAA GCACAACAAAAGTGAAGAACCTTGATGATAACATTGGTGCTGTAAAGGTAA
genomic: TTGGAGAAGAATAAAGTTTTCTACACACGAATTGAAGAGCTTGCCACCAAgtatggctgc ... ttgaatttagGCACAACAAAAGTGAAGAACCTTGATGATAACATTGGTGCTGTAAAGGTAA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TCTTCTTTGCTACTTCACAGACTAGACATCCAAGGTACAATGGGGAAAACTTGGAGAAGAATAAAGTTTTCTACACACGAATTGAAGAGCTTGCCACCAAgtatggctgctcccctgctcaacttgctctctcctgggttcttcatcaaggggatgatgttgttccaatccctggtaatgtgttaaacatatttagtacg
- - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -cccctgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ctctctcc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ggggatg