Skip to another splice site:
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 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGAAGGCTCAGACTTCCACTGACAGGTTTGAGATGTGGGGTGATGGCCTCCAGACCCGGTCCTTCACATTCATAGATGAGTGTGTTGAGGGTGTTCTGAGgtatgcagctacttgtcacattattatctagatagaacactaaaccacacctgattagatgagaagctggtctaatatgatacaaacaatttctag

Basic information

species Oryza sativa
transcript LOC_Os10g28200.1
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os10g28200.1 (Oryza sativa), 5'ss of exon 5
lower sequence: GRMZM2G124434_T01 (Zea mays), 5'ss of exon 5
GGAAGGCTCAGACTTCCACTGACAGGTTTGAGATGTGGGGTGATGGCCTCCAGACCCGGTCCTTCACATTCATAGATGAGTGTGTTGAGGGTGTTCTGAGgtatgcagctacttgtcacat-tattatctagatagaaca----ctaaaccacacctg-attagatgagaagctggt---ctaatatgatacaa--acaatttctag----------------
| ||||||||||| ||||| || ||||||||||||||||| ||||| ||||||||| |||||||||| ||||| || ||||| || |||||||||||||||||||    |     |   || || || | |  |  | ||    |||       ||||  ||   |       |||       | ||  ||  |  |  ||  | |                 
GAAAGGCTCAGACATCCACGGAGAGGTTTGAGATGTGGGGCGATGGTCTCCAGACCAGGTCCTTCACCTTCATCGACGAGTGCGTGGAGGGTGTTCTGAGgtatgtctgtgtgctttggatatactaccaaatttaagcaagagctagctgttgcctgtgttgtgtatagcaatggagaatcgacattgtatgacgatgatgcccacactgtgtgcactgcag

upper sequence: LOC_Os10g28200.1 (Oryza sativa), 5'ss of exon 5
lower sequence: GLYMA19G43400.1 (Glycine max), 5'ss of exon 5
GGAAGGCTCAGACTTCCACTGACAGGTTTGAGATGTGGGGTGATGGCCTCCAGACCCGGTCCTTCACATTCATAGATGAGTGTGTTGAGGGTGTTCTGAGgtatgcagctacttgtcacattattatctagatagaaca-ctaaacca-cacctgattagatgagaagctggtctaatatgatacaaacaatttctag------
| ||| | |  |||||||  ||  | |||||||||||||| |||||  | || ||  | |||||||| ||||| |||||||||||||| ||||| ||||||||| |   | |   |    |   ||  |   ||  ||| |||||  |    || |||    | |   ||  | |  ||  ||  |||  || |  |       
GCAAGACACTTACTTCCAAAGATCGATTTGAGATGTGGGGAGATGGATTGCAAACAAGATCCTTCACCTTCATTGATGAGTGTGTTGAAGGTGTACTGAGgtattcc-ttgcggattttgtggctaa-tgactattacatctaaattaatgacttatttacagggtttctcattt--taaaatttaaattatatggatatgtgt

upper sequence: LOC_Os10g28200.1 (Oryza sativa), 5'ss of exon 5
lower sequence: GLYMA19G43410.1 (Glycine max), 5'ss of exon 5
GGAAGGCTCAGACTTCCACTGACAGGTTTGAGATGTGGGGTGATGGCCTCCAGACCCGGTCCTTCACATTCATAGATGAGTGTGTTGAGGGTGTTCTGAGgtatgcagctacttgtcacattattatctagatagaaca-ctaaacca-cacctgattagatgagaagctggtctaatatgatacaaacaatttctag------
| ||| | |  |||||||  ||  | |||||||||||||| |||||  | || ||  | |||||||| ||||| |||||||||||||| ||||| ||||||||| |   | |   |    |   ||  |   ||  ||| |||||  |    || |||   ||||    |    |  ||  ||  |||  ||   ||       
GCAAGACACTTACTTCCAAAGATCGATTTGAGATGTGGGGAGATGGATTGCAAACAAGATCCTTCACCTTCATTGATGAGTGTGTTGAAGGTGTACTGAGgtattcc-ttgcggattttgtggctaa-tgactattacatctaaattaatgacttattt--tgagggtttctcattttaaaatttaaattatggatatgtgttt

upper sequence: LOC_Os10g28200.1 (Oryza sativa), 5'ss of exon 5
lower sequence: GLYMA03G40720.1 (Glycine max), 5'ss of exon 5
GGAAGGCTCAGACTTCCACTGACAGGTTTGAGATGTGGGGTGATGGCCTCCAGACCCGGTCCTTCACATTCATAGATGAGTGTGTTGAGGGTGTTCTGAGgtatgca--gctacttgtcacattattatctagatagaaca-ctaaacca-cacctgattagatgagaagctggtctaatatgatacaaacaatttctag---
| ||| | |  |||||||  ||| | |||||||||||||| |||||  | || ||  | |||||||| ||||| |||||||||||||| ||||| ||||||||| |   ||   || |     || |  |||  ||  ||| |||||  |    || |||     || |  |    |  ||  ||  |||  ||   ||    
GCAAGACACTTACTTCCAAAGACCGATTTGAGATGTGGGGAGATGGATTGCAAACAAGATCCTTCACCTTCATTGATGAGTGTGTTGAAGGTGTACTGAGgtattccttgcagattttgtggctaatgactat-tattacatctaaattaatgacttattt--ccaggatttctcattttaaaatttaaattatggatatgtg

upper sequence: LOC_Os10g28200.1 (Oryza sativa), 5'ss of exon 5
lower sequence: GLYMA10G30400.1 (Glycine max), 5'ss of exon 4
GGAAGGCTCAGACTTCCACTGACAGGTTTGAGATGTGGGGTGATGGCCTCCAGACCCGGTCCTTCACATTCATAGATGAGTGTGTTGAGGGTGTTCTGAGgtatgcagctacttgtcacattattatctagatagaacactaaaccacacctgattagatgagaagctggtctaatat-gatacaaacaatttctag-----
| || |     ||||||||||| || |||||||||||||| |||||  | || || || || || || ||||| |||||||||||||| ||||| || |||||||      ||  |    |   |   ||| |  |  | |         || |||   ||      | || ||||||  | |     || ||  |      
GTAAAGTAATCACTTCCACTGATAGATTTGAGATGTGGGGAGATGGATTGCAAACACGATCATTTACCTTCATTGATGAGTGTGTTGAAGGTGTGCTTAGgtatgtcttggctaattttgtggct-catagctgaattattgtgttctttct-attgtttgtagttgtagtttaatattaagattctgaacttgcacttttc

upper sequence: LOC_Os10g28200.1 (Oryza sativa), 5'ss of exon 5
lower sequence: AT5G28840.1 (Arabidopsis thaliana), 5'ss of exon 5
GGAAGGCTCAGACTTCCACTGACAGGTTTGAGATGTGGGGTGATGGCCTCCAGACCCGGTCCTTCACATTCATAGATGAGTGTGTTGAGGGTGTTCTGAGgtatgcagctacttgtcacattattatctagatagaacactaaaccacacctgattagatgagaagctggtctaatatgatacaaacaatttctag
|||||||||||||||||||||| ||||||||||||||||| ||||| || |||||||| || || || || || |||||||||||||| ||||| || ||||  |         |  |  |  | || | |||  |    ||    | || | ||| | ||| |   | |||   | || |  | |          
GGAAGGCTCAGACTTCCACTGATAGGTTTGAGATGTGGGGAGATGGGCTTCAGACCCGTTCTTTTACCTTTATCGATGAGTGTGTTGAAGGTGTACTCAGgtgag---------ggtatctcctgatgttgatgaagttgtatgttagacgtaattggctgatattttcgtcatttttgttttatag---------

upper sequence: LOC_Os10g28200.1 (Oryza sativa), 5'ss of exon 5
lower sequence: EFJ09286 (Selaginella moellendorffii), 5'ss of exon 4
GGAAGGCTCAGACTTCCACTGACAGGTTTGAGATGTGGGGTGATGGCCTCCAGACCCGGTCCTTCACATTCATAGATGAGTGTGTTGAGGGTGTTCTGAGgtatgcagctacttgtcacattattatctagatagaacactaaaccacacctgattagatgagaagctggtctaatatgatacaaacaatttctag
|||| ||||  ||||||||||| | |||||||||||||||||||||    || || || || || || ||||| ||||| ||||| ||||||||| |||||| ||   ||  ||       |  | ||| ||    |   |  | |    || | | |         |  |||    ||      |||        
GGAAAGCTCTAACTTCCACTGATAAGTTTGAGATGTGGGGTGATGGGAAGCAAACACGATCATTTACGTTCATCGATGAATGTGTGGAGGGTGTTTTGAGgtgtgtctcttttt------ctgctttctggaattgatggtcgatcgattctaaat-gtcttttgctttttctttcttgtcgtgcacag-------

upper sequence: LOC_Os10g28200.1 (Oryza sativa), 5'ss of exon 5
lower sequence: EFJ12864 (Selaginella moellendorffii), 5'ss of exon 4
GGAAGGCTCAGACTTCCACTGACAGGTTTGAGATGTGGGGTGATGGCCTCCAGACCCGGTCCTTCACATTCATAGATGAGTGTGTTGAGGGTGTTCTGAGgtatgcagctacttgtcacattattatctaga-tagaacactaaaccacacctgattagatgagaagctggtctaatatgatacaaacaatttctag
|||| ||||  ||||||||||| | |||||||||||||||||||||    || || || || || || ||||| ||||| ||||| ||||||||| |||||| ||   ||  ||       |  | ||| || | ||      | | | ||   ||    |  |    |  | |  | |  | || |          
GGAAAGCTCTAACTTCCACTGATAAGTTTGAGATGTGGGGTGATGGGAAGCAAACACGATCATTTACGTTCATCGATGAATGTGTGGAGGGTGTTTTGAGgtgtgtctcttttt------ctgctttctggaattgatggtcgatcgatactaaatgccttttgctttttctttcttgtcgtgcacag---------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|29642006|gb|CB647013.1|CB647013
EST:     CAGACCCGGTCCTTCACATTCATAGATGAGTGTGTTGAGGGTGTTCTGAG                         GTTGACAAAGTCGGACTTCCGTGAGCCAGTGAACATTGGAAGCGATGAAAT
genomic: CAGACCCGGTCCTTCACATTCATAGATGAGTGTGTTGAGGGTGTTCTGAGgtatgcagct ... caatttctagGTTGACAAAGTCGGACTTCCGTGAGCCAGTGAACATTGGAAGCGATGAAAT
EST: gi|29657347|gb|CB653622.1|CB653622
EST:     CAGACCCGGTCCTTCACATTCATAGATGAGTGTGTTGAGGGTGTTCTGAG                         GTTGACAAAGTCGGACTTCCGTGAGCCAGTGAACATTGGAAGCGATGAAAT
genomic: CAGACCCGGTCCTTCACATTCATAGATGAGTGTGTTGAGGGTGTTCTGAGgtatgcagct ... caatttctagGTTGACAAAGTCGGACTTCCGTGAGCCAGTGAACATTGGAAGCGATGAAAT
EST: gi|29656908|gb|CB653183.1|CB653183
EST:     CAGACCCGGTCCTTCACATTCATAGATGAGTGTGTTGAGGGTGTTCTGAG                         GTTGACAAAGTCGGACTTCCGTGAGCCAGTGAACATTGGAAGCGATGAAAT
genomic: CAGACCCGGTCCTTCACATTCATAGATGAGTGTGTTGAGGGTGTTCTGAGgtatgcagct ... caatttctagGTTGACAAAGTCGGACTTCCGTGAGCCAGTGAACATTGGAAGCGATGAAAT
EST: gi|29663379|gb|CB659654.1|CB659654
EST:     CAGACCCGGTCCTTCACATTCATAGATGAGTGTGTTGAGGGTGTTCTGAG                         GTTGACAAAGTCGGACTTCCGTGAGCCAGTGAACATTGGAAGCGATGAAAT
genomic: CAGACCCGGTCCTTCACATTCATAGATGAGTGTGTTGAGGGTGTTCTGAGgtatgcagct ... caatttctagGTTGACAAAGTCGGACTTCCGTGAGCCAGTGAACATTGGAAGCGATGAAAT
EST: gi|29663089|gb|CB659364.1|CB659364
EST:     CAGACCCGGTCCTTCACATTCATAGATGAGTGTGTTGAGGGTGTTCTGAG                         GTTGACAAAGTCGGACTTCCGTGAGCCAGTGAACATTGGAAGCGATGAAAT
genomic: CAGACCCGGTCCTTCACATTCATAGATGAGTGTGTTGAGGGTGTTCTGAGgtatgcagct ... caatttctagGTTGACAAAGTCGGACTTCCGTGAGCCAGTGAACATTGGAAGCGATGAAAT
EST: gi|86494710|gb|CI137343.1|CI137343
EST:     CAGACCCGGTCCTTCACATTCATAGATGAGTGTGTTGAGGGTGTTCTGAG                         GTTGACAAAGTCGGACTTCCGTGAGCCAGTGAACATTGGAAGCGATGAAAT
genomic: CAGACCCGGTCCTTCACATTCATAGATGAGTGTGTTGAGGGTGTTCTGAGgtatgcagct ... caatttctagGTTGACAAAGTCGGACTTCCGTGAGCCAGTGAACATTGGAAGCGATGAAAT
EST: gi|29663824|gb|CB660099.1|CB660099
EST:     CAGACCCGGTCCTTCACATTCATAGATGAGTGTGTTGAGGGTGTTCTGAG                         GTTGACAAAGTCGGACTTCCGTGAGCCAGTGAACATTGGAAGCGATGAAAT
genomic: CAGACCCGGTCCTTCACATTCATAGATGAGTGTGTTGAGGGTGTTCTGAGgtatgcagct ... caatttctagGTTGACAAAGTCGGACTTCCGTGAGCCAGTGAACATTGGAAGCGATGAAAT
EST: gi|29638323|gb|CB643332.1|CB643332
EST:     CAGACCCGGTCCTTCACATTCATAGATGAGTGTGTTGAGGGTGTTCTGAG                         GTTGACAAAGTCGGACTTCCGTGAGCCAGTGAACATTGGAAGCGATGAAAT
genomic: CAGACCCGGTCCTTCACATTCATAGATGAGTGTGTTGAGGGTGTTCTGAGgtatgcagct ... caatttctagGTTGACAAAGTCGGACTTCCGTGAGCCAGTGAACATTGGAAGCGATGAAAT
EST: gi|29638696|gb|CB643705.1|CB643705
EST:     GACCCGGTCCTTCACATTCATAGATGAGTGTGTTGAGGGTGTTCTGAG                         GTTGACAAAGTCGGACTTCCGTGAGCCAGTGAACATTGGAAGCGATGAAAT
genomic: GACCCGGTCCTTCACATTCATAGATGAGTGTGTTGAGGGTGTTCTGAGgtatgcagct ... caatttctagGTTGACAAAGTCGGACTTCCGTGAGCCAGTGAACATTGGAAGCGATGAAAT
EST: gi|29656907|gb|CB653182.1|CB653182
EST:     CAGACCCGGTCCTTCACATTCATAGATGAGTGTGTTGAGGGTGTTCTGAG                         GTTGACAAAGTCGGACTTCCGTGAGCCAGTGAACATTGGAAGCGATGAAAT
genomic: CAGACCCGGTCCTTCACATTCATAGATGAGTGTGTTGAGGGTGTTCTGAGgtatgcagct ... caatttctagGTTGACAAAGTCGGACTTCCGTGAGCCAGTGAACATTGGAAGCGATGAAAT
EST: gi|58691767|gb|CK080454.1|CK080454
EST:     CAGACCCGGTCCTTCACATTCATAGATGAGTGTGTTGAGGGTGTTCTGAG                         GTTGACAAAGTCGGACTTCCGTGAGCCAGTGAACATT
genomic: CAGACCCGGTCCTTCACATTCATAGATGAGTGTGTTGAGGGTGTTCTGAGgtatgcagct ... caatttctagGTTGACAAAGTCGGACTTCCGTGAGCCAGTGAACATT
EST: gi|29663380|gb|CB659655.1|CB659655
EST:     CAGACCCGGTCCTTCACATTCATAGATGAGTGTGTTGAGGGTGTTCTGAG                         GTTGACAAAGTCGGACTTCCGTGAGCCAGTGAACATTGGAAGCGATGAAAT
genomic: CAGACCCGGTCCTTCACATTCATAGATGAGTGTGTTGAGGGTGTTCTGAGgtatgcagct ... caatttctagGTTGACAAAGTCGGACTTCCGTGAGCCAGTGAACATTGGAAGCGATGAAAT
EST: gi|29663825|gb|CB660100.1|CB660100
EST:     CAGACCCGGTCCTTCACATTCATAGATGAGTGTGTTGAGGGTGTTCTGAG                         GTTGACAAAGTCGGACTTCCGTGAGCCAGTGAACATTGGAAGCGATGAAAT
genomic: CAGACCCGGTCCTTCACATTCATAGATGAGTGTGTTGAGGGTGTTCTGAGgtatgcagct ... caatttctagGTTGACAAAGTCGGACTTCCGTGAGCCAGTGAACATTGGAAGCGATGAAAT
EST: gi|313079521|gb|HO213079.1|HO213079
EST:     CAGACCCGGTCCTTCACATTCATAGATGAGTGTGTTGAGGGTGTTCTGAG                         GTTGACAAAGTCGGACTTCCGTGAGCCAGTGAACATTGGAAGCGATGAAAT
genomic: CAGACCCGGTCCTTCACATTCATAGATGAGTGTGTTGAGGGTGTTCTGAGgtatgcagct ... caatttctagGTTGACAAAGTCGGACTTCCGTGAGCCAGTGAACATTGGAAGCGATGAAAT
EST: gi|58591287|gb|CF989595.1|CF989595
EST:     CAGACCCGGTCCTTCACATTCATAGATGAGTGTGTTGAGGGTGTTCTGAG                         GTTGACAAAGTCGGACTTCCGTGAGCCAGTGAACGGGGGAAGCGATGAAAT
genomic: CAGACCCGGTCCTTCACATTCATAGATGAGTGTGTTGAGGGTGTTCTGAGgtatgcagct ... caatttctagGTTGACAAAGTCGGACTTCCGTGAGCCAGTGAACATTGGAAGCGATGAAAT
EST: gi|25800810|gb|CA756771.1|CA756771
EST:     CAGACCCGGTCCTTCACATTCATAGATGAGTGTGTTGAGGGTGTTCTGAG                         GTTGACAAAGTCGGACTTCCGTGAGCCAGTGAACATTGGAAGCGATGAAAT
genomic: CAGACCCGGTCCTTCACATTCATAGATGAGTGTGTTGAGGGTGTTCTGAGgtatgcagct ... caatttctagGTTGACAAAGTCGGACTTCCGTGAGCCAGTGAACATTGGAAGCGATGAAAT
EST: gi|29659321|gb|CB655596.1|CB655596
EST:     CAGACCCGGTCCTTCACATTCATAGATGAGTGTGTTGAGGGTGTTCTGAG                         GTTGACAAAGTCGGACTTCCGTGAGCCAGTGAACATTGGAAGCGATGAAAT
genomic: CAGACCCGGTCCTTCACATTCATAGATGAGTGTGTTGAGGGTGTTCTGAGgtatgcagct ... caatttctagGTTGACAAAGTCGGACTTCCGTGAGCCAGTGAACATTGGAAGCGATGAAAT
EST: gi|29672450|gb|CB668725.1|CB668725
EST:     CAGACCCGGTCCTTCACATTCATAGATGAGTGTGTTGAGGGTGTTCTGAG                         GTTGACAAAGTCGGACTTCCGTGAGCCAGTGAACATTGGAAGCGATGAAAT
genomic: CAGACCCGGTCCTTCACATTCATAGATGAGTGTGTTGAGGGTGTTCTGAGgtatgcagct ... caatttctagGTTGACAAAGTCGGACTTCCGTGAGCCAGTGAACATTGGAAGCGATGAAAT
EST: gi|33801053|gb|CF326400.1|CF326400
EST:     CAGACCCGGTCCTTCACATTCATAGATGAGTGTGTTGAGGGTGTTCTGAG                         GTTGACAAAGTCGGACTTCCGTGAGCCAGTGAACATTGGAAGCGATGAAAT
genomic: CAGACCCGGTCCTTCACATTCATAGATGAGTGTGTTGAGGGTGTTCTGAGgtatgcagct ... caatttctagGTTGACAAAGTCGGACTTCCGTGAGCCAGTGAACATTGGAAGCGATGAAAT
EST: gi|29638322|gb|CB643331.1|CB643331
EST:     CAGACCCGGTCCTTCACATTCATAGATGAGTGTGTTGAGGGTGTTCTGAG                         GTTGACAGAGTCGGACTTCCGTGAGCCAGTGAACATTGGAAGCGATGAAAT
genomic: CAGACCCGGTCCTTCACATTCATAGATGAGTGTGTTGAGGGTGTTCTGAGgtatgcagct ... caatttctagGTTGACAAAGTCGGACTTCCGTGAGCCAGTGAACATTGGAAGCGATGAAAT
EST: gi|58590748|gb|CF989056.1|CF989056
EST:     CAGACCCGGTCCTTCACATTCATAGATGAGTGTGTTGAGGGTGTTCTGAG                         GTTGACAAAGTCGGACTTCCGTGAGCCAGTGAACATTGGAAGCGATGAAAT
genomic: CAGACCCGGTCCTTCACATTCATAGATGAGTGTGTTGAGGGTGTTCTGAGgtatgcagct ... caatttctagGTTGACAAAGTCGGACTTCCGTGAGCCAGTGAACATTGGAAGCGATGAAAT
EST: gi|29656793|gb|CB653068.1|CB653068
EST:     CAGACCCGGTCCTTCACATTCATAGATGAGTGTGTTGAGGGTGTTCTGAG                         GTTGACAAAGTCGGACTTCCGTGAGCCAGTGAACATTGGAAGCGATGAAAT
genomic: CAGACCCGGTCCTTCACATTCATAGATGAGTGTGTTGAGGGTGTTCTGAGgtatgcagct ... caatttctagGTTGACAAAGTCGGACTTCCGTGAGCCAGTGAACATTGGAAGCGATGAAAT
EST: gi|29662150|gb|CB658425.1|CB658425
EST:     CAGACCCGGTCCTTCACATTCATAGATGAGTGTGTTGAGGGTGTTCTGAG                         GTTGACAAAGTCGGACTTCCGTGAGCCAGTGAACATTGGAAGCGATGAAAT
genomic: CAGACCCGGTCCTTCACATTCATAGATGAGTGTGTTGAGGGTGTTCTGAGgtatgcagct ... caatttctagGTTGACAAAGTCGGACTTCCGTGAGCCAGTGAACATTGGAAGCGATGAAAT
EST: gi|29669313|gb|CB665588.1|CB665588
EST:     CAGACCCGGTCCTTCACATTCATAGATGAGTGTGTTGAGGGTGTTCTGAG                         GTTGACAAAGTCGGACTTCCGTGAGCCAGTGAACATTGGAAGCGATGAAAT
genomic: CAGACCCGGTCCTTCACATTCATAGATGAGTGTGTTGAGGGTGTTCTGAGgtatgcagct ... caatttctagGTTGACAAAGTCGGACTTCCGTGAGCCAGTGAACATTGGAAGCGATGAAAT
EST: gi|86495431|gb|CI138064.1|CI138064
EST:     GATGAGTGTGTTGAGGGTGTTCTGAG                         GTTGACAAAGTCGGACTTCCGTGAGCCAGTGAACATTGGAAGCGATGAAAT
genomic: GATGAGTGTGTTGAGGGTGTTCTGAGgtatgcagct ... caatttctagGTTGACAAAGTCGGACTTCCGTGAGCCAGTGAACATTGGAAGCGATGAAAT
EST: gi|29680860|gb|CB677135.1|CB677135
EST:     CAGACCCGGTCCTTCACATTCATAGATGAGTGTGTTGAGGGTGTTCTGAG                         GTTGACAAAGTCGGACTTCCGTGAGCCAGTGAACATTGGAAGCGATGAAAT
genomic: CAGACCCGGTCCTTCACATTCATAGATGAGTGTGTTGAGGGTGTTCTGAGgtatgcagct ... caatttctagGTTGACAAAGTCGGACTTCCGTGAGCCAGTGAACATTGGAAGCGATGAAAT
EST: gi|29668589|gb|CB664864.1|CB664864
EST:     CAGACCCGGTCCTTCACATTCATAGATGAGTGTGTTGAGGGTGTTCTGAG                         GTTGACAAAGTCGGACTTCCGTGAGCCAGTGAACATTGGAAGCGATGAAAT
genomic: CAGACCCGGTCCTTCACATTCATAGATGAGTGTGTTGAGGGTGTTCTGAGgtatgcagct ... caatttctagGTTGACAAAGTCGGACTTCCGTGAGCCAGTGAACATTGGAAGCGATGAAAT
EST: gi|86858737|gb|CI275016.1|CI275016
EST:     CAGACCCGGTCCTTCACATTCATAGATGAGTGTGTTGAGGGTGTTCTGAG                         GTTGACAAAGTCGGACTTCCGTGAGCCAGTGAACATTGGAAGCGATGAAAT
genomic: CAGACCCGGTCCTTCACATTCATAGATGAGTGTGTTGAGGGTGTTCTGAGgtatgcagct ... caatttctagGTTGACAAAGTCGGACTTCCGTGAGCCAGTGAACATTGGAAGCGATGAAAT
EST: gi|29630035|gb|CB635044.1|CB635044
EST:     CAGACCCGGTCCTTCACATTCATAGATGAGTGTGTTGAGGGTGTTCTGAG                         GTTGACAAAGTCGGACTTCCGTGAGCCAGTGAACATTGGAAGCGATGAAAT
genomic: CAGACCCGGTCCTTCACATTCATAGATGAGTGTGTTGAGGGTGTTCTGAGgtatgcagct ... caatttctagGTTGACAAAGTCGGACTTCCGTGAGCCAGTGAACATTGGAAGCGATGAAAT
EST: gi|29676977|gb|CB673252.1|CB673252
EST:     CAGACCCGGTCCTTCACATTCATAGATGAGTGTGTTGAGGGTGTTCTGAG                         GTTGACAAAGTCGGACTTCCGTGAGCCAGTGAACATTGGAAGCGATGAAAT
genomic: CAGACCCGGTCCTTCACATTCATAGATGAGTGTGTTGAGGGTGTTCTGAGgtatgcagct ... caatttctagGTTGACAAAGTCGGACTTCCGTGAGCCAGTGAACATTGGAAGCGATGAAAT
EST: gi|29657346|gb|CB653621.1|CB653621
EST:     CAGACCCGGTCCTTCACATTCATAGATGAGTGTGTTGAGGGTGTTCTGAG                         GTTGACAAAGTCGGACTTCCGTGAGCCAGTGAACATTGGAAGCGATGAAAT
genomic: CAGACCCGGTCCTTCACATTCATAGATGAGTGTGTTGAGGGTGTTCTGAGgtatgcagct ... caatttctagGTTGACAAAGTCGGACTTCCGTGAGCCAGTGAACATTGGAAGCGATGAAAT
EST: gi|29688061|gb|CB684336.1|CB684336
EST:     CAGACCCGGTCCTTCACATTCATAGATGAGTGTGTTGAGGGTGTTCTGAG                         GTTGACAAAGTCGGACTTCCGTGAGCCAGTGAACATTGGAAGCGATGAAAT
genomic: CAGACCCGGTCCTTCACATTCATAGATGAGTGTGTTGAGGGTGTTCTGAGgtatgcagct ... caatttctagGTTGACAAAGTCGGACTTCCGTGAGCCAGTGAACATTGGAAGCGATGAAAT
EST: gi|29641880|gb|CB646887.1|CB646887
EST:     CAGACCCGGTCCTTCACATTCATAGATGAGTGTGTTGAGGGTGTTCTGAG                         GTTGACAAAGTCGGACTTCCGTGAGCCAGTGAACATTGGAAGCGATGAAAT
genomic: CAGACCCGGTCCTTCACATTCATAGATGAGTGTGTTGAGGGTGTTCTGAGgtatgcagct ... caatttctagGTTGACAAAGTCGGACTTCCGTGAGCCAGTGAACATTGGAAGCGATGAAAT
EST: gi|87016591|gb|CI275593.1|CI275593
EST:     CAGACCCGGTCCTTCACATTCATAGATGAGTGTGTTGAGGGTGTTCTGAG                         GTTGACAAAGTCGGACTTCCGTGAGCCAGTGAACATTGGAAGCGATGAAAT
genomic: CAGACCCGGTCCTTCACATTCATAGATGAGTGTGTTGAGGGTGTTCTGAGgtatgcagct ... caatttctagGTTGACAAAGTCGGACTTCCGTGAGCCAGTGAACATTGGAAGCGATGAAAT
EST: gi|86498722|gb|CI141355.1|CI141355
EST:     GATGAGTGTGTTGAGGGTGTTCTGAG                         GTTGACAAAGTCGGACTTCCGTGAGCCAGTGAACATTGGAAGCGATGAAAT
genomic: GATGAGTGTGTTGAGGGTGTTCTGAGgtatgcagct ... caatttctagGTTGACAAAGTCGGACTTCCGTGAGCCAGTGAACATTGGAAGCGATGAAAT

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 66 (upstream exon), 75 (downstream exon)
Score: 56

GGAAGGCTCAGACTTCCACTGACAGGTTTGAGATGTGGGGTGATGGCCTCCAGACCCGGTCCTTCACATTCATAGATGAGTGTGTTGAGGGTGTTCTGAGgtatgcagct ... caatttctagGTTGACAAAGTCGGACTTCCGTGAGCCAGTGAACATTGGAAGCGATGAAATGGTAAGCATGAACGAGATGGCTGAAATCATTCTCAGCTTCGAGGATAGG




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