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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTATTGCTCTTTGTGATCATCCATGCTTGTTGGAAAAGGAGGAAACCAAATCATTGTTCAGgtgaatatcggcacctttatttcatcagcatcaaacagatatgcagagaacttaaatggagatatctagtgcaaacactcacattcctttagtttgctta...

Basic information

species Oryza sativa
transcript LOC_Os10g25130.1
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os10g25130.1 (Oryza sativa), 5'ss of exon 5
lower sequence: GRMZM2G088064_T03 (Zea mays), 5'ss of exon 5
GTTATTGCTCTTTGTGATCATCCATGCTTGTTGGAAAAGGAGGAAACCAAATCATTGTTCAGgtgaatatcggcacctttatttcatcagcatcaaacagatatgcagagaacttaaatggagatatctagtgcaaacactcacattcc---tttagtttgctta-
||| ||||||||||||||||||| ||| | |||||||| ||||||||||||||||||||||||||||||||| ||   | |||  ||   ||  |  |  | || |||||| ||     |  ||||||  |        | ||  |||    |  |     | || 
GTTCTTGCTCTTTGTGATCATCCGTGCCTCTTGGAAAAAGAGGAAACCAAATCATTGTTCAGgtgaatatcgtca---tcattcaatttacagaactcctaaattcagagatctagtgcgt-gatatcctgctatttttcccaacttcagtgtcaaagcaacctaa
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|25799461|gb|CA755422.1|CA755422
EST:     TGTGATCATCCATGCTTGTTGGAAAAGGAGGAAACCAAATCATTGTTCAG                         TGCTGATGCCATTTCTCGAGCAACAACAATTCTTGCCTCGATTCCTGGAAG
genomic: TGTGATCATCCATGCTTGTTGGAAAAGGAGGAAACCAAATCATTGTTCAGgtgaatatcg ... tttgctgcagTGCTGATGCCATTTCTCGAGCAACAACAATTCTTGCCTCGATTCCTGGAAG
EST: gi|88461669|gb|CI695511.1|CI695511
EST:     TGTGATCATCCATGCTTGTTGGAAAAGGAGGAAACCAAATCATTGTTCAG                         TGCTGATGCCATTTCTCGAGCAACAACAATTCTTGCCTCGATTCCTGGAAG
genomic: TGTGATCATCCATGCTTGTTGGAAAAGGAGGAAACCAAATCATTGTTCAGgtgaatatcg ... tttgctgcagTGCTGATGCCATTTCTCGAGCAACAACAATTCTTGCCTCGATTCCTGGAAG
EST: gi|88725019|gb|CI748278.1|CI748278
EST:     TGTGATCATCCATGCTTGTTGGAAAAGGAGGAAACCAAATCATTGTTCAG                         TGCTGATGCCATT
genomic: TGTGATCATCCATGCTTGTTGGAAAAGGAGGAAACCAAATCATTGTTCAGgtgaatatcg ... tttgctgcagTGCTGATGCCATT
EST: gi|88732555|gb|CI755732.1|CI755732
EST:     TGTGATCATCCATGCTTGTTGGAAAAGGAGGAAACCAAATCATTGTTCAG                         TGCTGATGCCATTTCTCGAGCAACAACAATTCTTGCCTCGATTCCTGGAAG
genomic: TGTGATCATCCATGCTTGTTGGAAAAGGAGGAAACCAAATCATTGTTCAGgtgaatatcg ... tttgctgcagTGCTGATGCCATTTCTCGAGCAACAACAATTCTTGCCTCGATTCCTGGAAG
EST: gi|88742367|gb|CI765875.1|CI765875
EST:     TGTGATCATCCATGCTTGTTGGAAAAGGAGGAAACCAAATCATTGTTCAG                         TGCTGATGCCATTTCTCGAGCAACAACAATTCTTGCC
genomic: TGTGATCATCCATGCTTGTTGGAAAAGGAGGAAACCAAATCATTGTTCAGgtgaatatcg ... tttgctgcagTGCTGATGCCATTTCTCGAGCAACAACAATTCTTGCC
EST: gi|87006703|gb|CI285737.1|CI285737
EST:     TGTGATCATCCATGCTTGTTGGAAAAGGAGGAAACCAAATCATTGTTCAG                         TGCTGATGCCATTTCTCGAGCAACAACAATTCTTGCCTCGATTCCTGGAAG
genomic: TGTGATCATCCATGCTTGTTGGAAAAGGAGGAAACCAAATCATTGTTCAGgtgaatatcg ... tttgctgcagTGCTGATGCCATTTCTCGAGCAACAACAATTCTTGCCTCGATTCCTGGAAG
EST: gi|88378998|gb|CI681826.1|CI681826
EST:     TGTGATCATCCATGCTTGTTGGAAAAGGAGGAAACCAAATCATTGTTCAG                         TGCTGATGCCATTTCTCGAGCAACAACAATTCTTGCCTCGATTCCTGGAAG
genomic: TGTGATCATCCATGCTTGTTGGAAAAGGAGGAAACCAAATCATTGTTCAGgtgaatatcg ... tttgctgcagTGCTGATGCCATTTCTCGAGCAACAACAATTCTTGCCTCGATTCCTGGAAG
EST: gi|88764555|gb|CI773673.1|CI773673
EST:     TGTGATCATCCATGCTTGTTGGAAAAGGAGGAAACCAAATCATTGTTCAG                         TGCTGATGCCATTTCTCGAGCAACAACAATTCTT
genomic: TGTGATCATCCATGCTTGTTGGAAAAGGAGGAAACCAAATCATTGTTCAGgtgaatatcg ... tttgctgcagTGCTGATGCCATTTCTCGAGCAACAACAATTCTT
EST: gi|88449918|gb|CI572049.1|CI572049
EST:     TGTGATCATCCATGCTTGTTGGAAAAGGAGGAAACCAAATCATTGTTCAG                         TGCTGATGCCATTTCTCGAGCAACAACAATTCTTGCCTCGATTCCTGGAAG
genomic: TGTGATCATCCATGCTTGTTGGAAAAGGAGGAAACCAAATCATTGTTCAGgtgaatatcg ... tttgctgcagTGCTGATGCCATTTCTCGAGCAACAACAATTCTTGCCTCGATTCCTGGAAG
EST: gi|88330875|gb|CI636887.1|CI636887
EST:     TGTGATCATCCATGCTTGTTGGAAAAGGAGGAAACCAAATCATTGTTCAG                         TGCTGATGCCATTTCTCGAGCAACAACAATTCTTGCCTCGATTCCTGGAAG
genomic: TGTGATCATCCATGCTTGTTGGAAAAGGAGGAAACCAAATCATTGTTCAGgtgaatatcg ... tttgctgcagTGCTGATGCCATTTCTCGAGCAACAACAATTCTTGCCTCGATTCCTGGAAG
EST: gi|88728954|gb|CI752464.1|CI752464
EST:     TGTGATCATCCATGCTTGTTGGAAAAGGAGGAAACCAAATCATTGTTCAG                         TGCTGATGCCATTTCTCGAGCAACAACAATTCTTG
genomic: TGTGATCATCCATGCTTGTTGGAAAAGGAGGAAACCAAATCATTGTTCAGgtgaatatcg ... tttgctgcagTGCTGATGCCATTTCTCGAGCAACAACAATTCTTG
EST: gi|88333364|gb|CI642401.1|CI642401
EST:     TGTGATCATCCATGCTTGTTGGAAAAGGAGGAAACCAAATCATTGTTCAG                         TGCTGATGCCATTTCTCGAGCAACAA
genomic: TGTGATCATCCATGCTTGTTGGAAAAGGAGGAAACCAAATCATTGTTCAGgtgaatatcg ... tttgctgcagTGCTGATGCCATTTCTCGAGCAACAA
EST: gi|88359809|gb|CI622499.1|CI622499
EST:     TGTGATCATCCATGCTTGTTGGAAAAGGAGGAAACCAAATCATTGTTCAG                         TGCTGATGCCATTTCTCGAGCAACAACAATTCTTGCCTCGATTCCTGG
genomic: TGTGATCATCCATGCTTGTTGGAAAAGGAGGAAACCAAATCATTGTTCAGgtgaatatcg ... tttgctgcagTGCTGATGCCATTTCTCGAGCAACAACAATTCTTGCCTCGATTCCTGG
EST: gi|88361410|gb|CI605191.1|CI605191
EST:     TGTGATCATCCATGCTTGTTGGAAAAGGAGGAAACCAAATCATTGTTCAG                         TGCTGATGCCATTTCTCGAGCAACAACAATTCTTGCCTCGATTCCTGGAAG
genomic: TGTGATCATCCATGCTTGTTGGAAAAGGAGGAAACCAAATCATTGTTCAGgtgaatatcg ... tttgctgcagTGCTGATGCCATTTCTCGAGCAACAACAATTCTTGCCTCGATTCCTGGAAG
EST: gi|88294606|gb|CI602326.1|CI602326
EST:     TGTGATCATCCATGCTTGTTGGAAAAGGAGGAAANCAAATCATTGTTCAG                         TGCTGATGCCATTTCTCGAGCAACAACAATTCTTGCCTCGATTCCTGGAAG
genomic: TGTGATCATCCATGCTTGTTGGAAAAGGAGGAAACCAAATCATTGTTCAGgtgaatatcg ... tttgctgcagTGCTGATGCCATTTCTCGAGCAACAACAATTCTTGCCTCGATTCCTGGAAG
EST: gi|426561|gb|D22384.1|D22384
EST:     TGTGATCATCCATGCTTGTTGGAAAAGGAGGAAACCAAATCATTGTTCAG                         TGCTGATGCCATTTCTC
genomic: TGTGATCATCCATGCTTGTTGGAAAAGGAGGAAACCAAATCATTGTTCAGgtgaatatcg ... tttgctgcagTGCTGATGCCATTTCTC
EST: gi|29667022|gb|CB663297.1|CB663297
EST:     TGTGATCATCCATGCTTGTTGGAAAAGGAGGAAACCAAATCATTGTTCAG                         TGCTGATGCCATTTCTCGAGCAACAACAATTCTTGCCTCGATTCCTGGAAG
genomic: TGTGATCATCCATGCTTGTTGGAAAAGGAGGAAACCAAATCATTGTTCAGgtgaatatcg ... tttgctgcagTGCTGATGCCATTTCTCGAGCAACAACAATTCTTGCCTCGATTCCTGGAAG
EST: gi|2428328|gb|C72791.1|C72791
EST:     TGTGATCATCCATGCTTGTTGGAAAAGGAGGAAACCAAATCATTGTTCAG                         TGCTGATGCCATTTCTCGAGCAACAACAATTCTTGCCTCGATTCCTGGAAG
genomic: TGTGATCATCCATGCTTGTTGGAAAAGGAGGAAACCAAATCATTGTTCAGgtgaatatcg ... tttgctgcagTGCTGATGCCATTTCTCGAGCAACAACAATTCTTGCCTCGATTCCTGGAAG
EST: gi|88387977|gb|CI590253.1|CI590253
EST:     TGTGATCATCCATGCTTGTTGGAAAAGGAGGAAACCAAATCATTGTTCAG                         TGCTGATGCCATTTCTCGAGCAACAACAATTCTTGCCTCGATTCCTGGAAG
genomic: TGTGATCATCCATGCTTGTTGGAAAAGGAGGAAACCAAATCATTGTTCAGgtgaatatcg ... tttgctgcagTGCTGATGCCATTTCTCGAGCAACAACAATTCTTGCCTCGATTCCTGGAAG
EST: gi|88389062|gb|CI595296.1|CI595296
EST:     TGTGATCATCCATGCTTGTTGGAAAAGGAGGAAACCAAATCATTGTTCAG                         TGCTGATGCCATTTCTCGAGCAACAACAATTCTTGCCTCGATTCC
genomic: TGTGATCATCCATGCTTGTTGGAAAAGGAGGAAACCAAATCATTGTTCAGgtgaatatcg ... tttgctgcagTGCTGATGCCATTTCTCGAGCAACAACAATTCTTGCCTCGATTCC
EST: gi|29665582|gb|CB661857.1|CB661857
EST:     TGTGATCATCCATGCTTGTTGGAAAAGGAGGAAACCAAATCATTGTTCAG                         TGCTGATGCCATTTCTCGAGCAACAACAATTCTTGCCTCGATTCCTGGAAG
genomic: TGTGATCATCCATGCTTGTTGGAAAAGGAGGAAACCAAATCATTGTTCAGgtgaatatcg ... tttgctgcagTGCTGATGCCATTTCTCGAGCAACAACAATTCTTGCCTCGATTCCTGGAAG
EST: gi|14191907|gb|AU184118.1|AU184118
EST:     TGTGATCATCCATGCTTGTTGGAAAAGGAGGAAACCAAATCATTGTTCAG                         TGCTGATGCCATTTCTCGAGCAACAACAATTCTTGCCTCGATTCCTGGAAG
genomic: TGTGATCATCCATGCTTGTTGGAAAAGGAGGAAACCAAATCATTGTTCAGgtgaatatcg ... tttgctgcagTGCTGATGCCATTTCTCGAGCAACAACAATTCTTGCCTCGATTCCTGGAAG
EST: gi|88731781|gb|CI753501.1|CI753501
EST:     TGTGATCATCCATGCTTGTTGGAAAAGGAGGAAANCAAATCATTGTTCAG                         TGCTGATGCCATTTCTCGAGCAACAACAAT
genomic: TGTGATCATCCATGCTTGTTGGAAAAGGAGGAAACCAAATCATTGTTCAGgtgaatatcg ... tttgctgcagTGCTGATGCCATTTCTCGAGCAACAACAAT
EST: gi|88389245|gb|CI598043.1|CI598043
EST:     TGTGATCATCCATGCTTGTTGGAAAAGGAGGAAACCAAATCATTGTTCAG                         TGCTGATGCCATTTCTCGAGCAACAACAATTC
genomic: TGTGATCATCCATGCTTGTTGGAAAAGGAGGAAACCAAATCATTGTTCAGgtgaatatcg ... tttgctgcagTGCTGATGCCATTTCTCGAGCAACAACAATTC
EST: gi|88719418|gb|CI742928.1|CI742928
EST:     TGTGATCATCCATGCTTGTTGGAAAAGGAGGAAACCAAATCATTGTTCAG                         TGCTGATGCCATTTCTCGAGCAACAACAAT
genomic: TGTGATCATCCATGCTTGTTGGAAAAGGAGGAAACCAAATCATTGTTCAGgtgaatatcg ... tttgctgcagTGCTGATGCCATTTCTCGAGCAACAACAAT
EST: gi|157652418|gb|EX452052.1|EX452052
EST:     TGTGATCATCCATGCTTGTTGGAAAAGGAGGAAACCAAATCATTGTTCAG                         TGCTGATGCCATTTCTCGAGCAACAACAATTCTTGCCTCGATTCCTGGAAG
genomic: TGTGATCATCCATGCTTGTTGGAAAAGGAGGAAACCAAATCATTGTTCAGgtgaatatcg ... tttgctgcagTGCTGATGCCATTTCTCGAGCAACAACAATTCTTGCCTCGATTCCTGGAAG
EST: gi|157652409|gb|EX452043.1|EX452043
EST:     TGTGATCATCCATGCTTGTTGGAAAAGGAGGAAACCAAATCATTGTTCAG                         TGCTGATGCCATTTCTCGAGCAACAACAATTCTTGCCTCGATTCCTGGAAG
genomic: TGTGATCATCCATGCTTGTTGGAAAAGGAGGAAACCAAATCATTGTTCAGgtgaatatcg ... tttgctgcagTGCTGATGCCATTTCTCGAGCAACAACAATTCTTGCCTCGATTCCTGGAAG
EST: gi|58691201|gb|CK079888.1|CK079888
EST:     TGTGATCATCCATGCTTGTTGGAAAAGGAGGAAACCAAATCATTGTTCAG                         TGCTGATGCCATTTCTCGAGCAACAACAATTCTTGCCTCGATTCCTGGAAG
genomic: TGTGATCATCCATGCTTGTTGGAAAAGGAGGAAACCAAATCATTGTTCAGgtgaatatcg ... tttgctgcagTGCTGATGCCATTTCTCGAGCAACAACAATTCTTGCCTCGATTCCTGGAAG
EST: gi|86850230|gb|CI305469.1|CI305469
EST:     TGTGATCATCCATGCTTGTTGGAAAAGGAGGAAACCAAATCATTGTTCAG                         TGCTGATGCCATTTCTCGAGCAACAACAATTCTTGCCTCGATTCCTGGAAG
genomic: TGTGATCATCCATGCTTGTTGGAAAAGGAGGAAACCAAATCATTGTTCAGgtgaatatcg ... tttgctgcagTGCTGATGCCATTTCTCGAGCAACAACAATTCTTGCCTCGATTCCTGGAAG
EST: gi|426143|gb|D22000.1|D22000
EST:     TGTGATCATCCATGCTTGTTGGAAAAGGAGGAAACCAAATCATTGTTCAG                         TGCTGATGCCATTTCTCGAGCAACAAACAATTCTTGCCTCG
genomic: TGTGATCATCCATGCTTGTTGGAAAAGGAGGAAACCAAATCATTGTTCAGgtgaatatcg ... tttgctgcagTGCTGATGCCATTTCTCGAGCAACAA-CAATTCTTGCCTCG
EST: gi|88729159|gb|CI752669.1|CI752669
EST:     TGTGATCATCCATGCTTGTTGGAAAAGGAGGAAACCAAATCATTGTTCAG                         TGCTGATGCCATTTCTCGAGCAACAACAATTCTTGCCTCGATTCCTG
genomic: TGTGATCATCCATGCTTGTTGGAAAAGGAGGAAACCAAATCATTGTTCAGgtgaatatcg ... tttgctgcagTGCTGATGCCATTTCTCGAGCAACAACAATTCTTGCCTCGATTCCTG
EST: gi|157652426|gb|EX452060.1|EX452060
EST:     TGTGATCATCCATGCTTGTTGGAAAAGGAGGAAACCAAATCATTGTTCAG                         TGCTGATGCCATTTCTCGAGCAACAACAATTCTTGCCTCGATTCCTGGAAG
genomic: TGTGATCATCCATGCTTGTTGGAAAAGGAGGAAACCAAATCATTGTTCAGgtgaatatcg ... tttgctgcagTGCTGATGCCATTTCTCGAGCAACAACAATTCTTGCCTCGATTCCTGGAAG
EST: gi|88727454|gb|CI751109.1|CI751109
EST:     TGTGATCATCCATGCTTGTTGGAAAAGGAGGAAACCAAATCATTGTTCAG                         TGCTGATGCCATTTCTCGAGCAACAACAATTCTTG
genomic: TGTGATCATCCATGCTTGTTGGAAAAGGAGGAAACCAAATCATTGTTCAGgtgaatatcg ... tttgctgcagTGCTGATGCCATTTCTCGAGCAACAACAATTCTTG
EST: gi|88369245|gb|CI577708.1|CI577708
EST:     TGTGATCATCCATGCTTGTTGGAAAAGGAGGAAACCAAATCATTGTTCAG                         TGCTGATGCCATTTCTCGAGCAACAACAATTCTTGCCTCGATTCCTGGAAG
genomic: TGTGATCATCCATGCTTGTTGGAAAAGGAGGAAACCAAATCATTGTTCAGgtgaatatcg ... tttgctgcagTGCTGATGCCATTTCTCGAGCAACAACAATTCTTGCCTCGATTCCTGGAAG
EST: gi|88412291|gb|CI573567.1|CI573567
EST:     TGTGATCATCCATGCTTGTTGGAAAAGGAGGAAACCAAATCATTGTTCAG                         TGCTGATGCCATTTCTCGAGCAACAACAATTCTTGCCTCGATTCCTGGAAG
genomic: TGTGATCATCCATGCTTGTTGGAAAAGGAGGAAACCAAATCATTGTTCAGgtgaatatcg ... tttgctgcagTGCTGATGCCATTTCTCGAGCAACAACAATTCTTGCCTCGATTCCTGGAAG
EST: gi|88692286|gb|CI735861.1|CI735861
EST:     TGTGATCATCCATGCTTGTTGGAAAAGGAGGAAACCAAATCATTGTTCAG                         TGCTGATGCCATTTCTCGAGCAACAACAATTCTTGCCTCGATTC
genomic: TGTGATCATCCATGCTTGTTGGAAAAGGAGGAAACCAAATCATTGTTCAGgtgaatatcg ... tttgctgcagTGCTGATGCCATTTCTCGAGCAACAACAATTCTTGCCTCGATTC
EST: gi|27553989|gb|CA997889.1|CA997889
EST:     TGTGATCATCCATGCTTGTTGGAAAAGGAGGAAACCAAATTATTGGNCAG                         TGCTGTTTCCATTTCTCGAGCAACAACAATTCTTGCCTCGATTCCTGGAAG
genomic: TGTGATCATCCATGCTTGTTGGAAAAGGAGGAAACCAAATCATTGTTCAGgtgaatatcg ... tttgctgcagTGCTGATGCCATTTCTCGAGCAACAACAATTCTTGCCTCGATTCCTGGAAG
EST: gi|33675102|gb|CF303341.1|CF303341
EST:     TGTGATCATCCATGCTTGTTGGAAAAGGAGGAAACCAAATCATTGTTCAG                         TGCTGATGCCATTTCTCGAGCAACAACAATTCTTGCCTCGATTCCTGGAAG
genomic: TGTGATCATCCATGCTTGTTGGAAAAGGAGGAAACCAAATCATTGTTCAGgtgaatatcg ... tttgctgcagTGCTGATGCCATTTCTCGAGCAACAACAATTCTTGCCTCGATTCCTGGAAG
EST: gi|88726421|gb|CI750076.1|CI750076
EST:     TGTGATCATCCATGCTTGTTGGAAAAGGAGGAAACCAAATCATTGTTCAG                         TGCTGATGCCATTTCTCGAGCAACAACAATTCTTGCCTCGATTCCTGG
genomic: TGTGATCATCCATGCTTGTTGGAAAAGGAGGAAACCAAATCATTGTTCAGgtgaatatcg ... tttgctgcagTGCTGATGCCATTTCTCGAGCAACAACAATTCTTGCCTCGATTCCTGG
EST: gi|88763161|gb|CI772717.1|CI772717
EST:     TGTGATCATCCATGCTTGTTGGAAAAGGAGGAAACCAAATCATTGTTCAG                         TGCTGATGCCATTTCTCGAGC
genomic: TGTGATCATCCATGCTTGTTGGAAAAGGAGGAAACCAAATCATTGTTCAGgtgaatatcg ... tttgctgcagTGCTGATGCCATTTCTCGAGC
EST: gi|88726688|gb|CI750343.1|CI750343
EST:     TGTGATCATCCATGCTTGTTGGAAAAGGAGGAAACCAAATCATTGTTCGG                         TGCTGATGCCATTTCTC
genomic: TGTGATCATCCATGCTTGTTGGAAAAGGAGGAAACCAAATCATTGTTCAGgtgaatatcg ... tttgctgcagTGCTGATGCCATTTCTC
EST: gi|88761536|gb|CI771092.1|CI771092
EST:     TGTGATCATCCATGCTTGTTGGAAAAGGAGGAAACCAAATCATTGTTCAG                         TGCTGATGCCATTTCTCGAGCAACAACAATTCTTGCCTCGATTC
genomic: TGTGATCATCCATGCTTGTTGGAAAAGGAGGAAACCAAATCATTGTTCAGgtgaatatcg ... tttgctgcagTGCTGATGCCATTTCTCGAGCAACAACAATTCTTGCCTCGATTC
EST: gi|33691675|gb|CF319914.1|CF319914
EST:     TGTGATCATCCATGCTTGTTGGANAAGGAGGAAACCAAATCATTGTTCAG                         TGCTGATGCCATTTCTCGAGCAACAACAATTCTTGCCTCGATTCCTGGAAG
genomic: TGTGATCATCCATGCTTGTTGGAAAAGGAGGAAACCAAATCATTGTTCAGgtgaatatcg ... tttgctgcagTGCTGATGCCATTTCTCGAGCAACAACAATTCTTGCCTCGATTCCTGGAAG
EST: gi|88356189|gb|CI627637.1|CI627637
EST:     TGTGATCATCCATGCTTGTTGGAAAAGGAGGAAACCAAATCATTGTTCAG                         TGCTGATGCCATTTCTCGAGCAACAACAATTCTTGCCTCGATTCCTGGAAG
genomic: TGTGATCATCCATGCTTGTTGGAAAAGGAGGAAACCAAATCATTGTTCAGgtgaatatcg ... tttgctgcagTGCTGATGCCATTTCTCGAGCAACAACAATTCTTGCCTCGATTCCTGGAAG
EST: gi|88717437|gb|CI740947.1|CI740947
EST:     TGTGATCATCCATGCTTGTTGGAAAAGGAGGAAACCAAATCATTGTTCAG                         TGCTGATGCCATTTCTCGAGCA
genomic: TGTGATCATCCATGCTTGTTGGAAAAGGAGGAAACCAAATCATTGTTCAGgtgaatatcg ... tttgctgcagTGCTGATGCCATTTCTCGAGCA
EST: gi|88728928|gb|CI752438.1|CI752438
EST:     TGTGATCATCCATGCTTGTTGGAAAAGGAGGAAACCAAATCATTGTTCAG                         TGCTGATGCCATTTCTCGAGCAAC
genomic: TGTGATCATCCATGCTTGTTGGAAAAGGAGGAAACCAAATCATTGTTCAGgtgaatatcg ... tttgctgcagTGCTGATGCCATTTCTCGAGCAAC
EST: gi|88357770|gb|CI625021.1|CI625021
EST:     TGTGATCATCCATGCTTGTTGGAAAAGGAGGAAACCAAATCATTGTTCAG                         TGCTGATGCCATTTCT
genomic: TGTGATCATCCATGCTTGTTGGAAAAGGAGGAAACCAAATCATTGTTCAGgtgaatatcg ... tttgctgcagTGCTGATGCCATTTCT
EST: gi|88730392|gb|CI754005.1|CI754005
EST:     TGTGATCATCCATGCTTGTTGGAAAAGGAGGAAACCAAATCATTGTTCAG                         TGCTGATGCCATTTCTCGAGCAACAACA
genomic: TGTGATCATCCATGCTTGTTGGAAAAGGAGGAAACCAAATCATTGTTCAGgtgaatatcg ... tttgctgcagTGCTGATGCCATTTCTCGAGCAACAACA
EST: gi|88741889|gb|CI764394.1|CI764394
EST:     TGTGATCATCCATGCTTGTTGGAAAAGGAGGAAACCAAATCATTGTTCAG                         TGCTGATGCCAT
genomic: TGTGATCATCCATGCTTGTTGGAAAAGGAGGAAACCAAATCATTGTTCAGgtgaatatcg ... tttgctgcagTGCTGATGCCAT
EST: gi|88294360|gb|CI667334.1|CI667334
EST:     TGTGATCATCCATGCTTGTTGGAAAAGGAGGAAACCAAATCATTGTTCAG                         TGCTGATGCCATTTCTCGAGCAACAAC
genomic: TGTGATCATCCATGCTTGTTGGAAAAGGAGGAAACCAAATCATTGTTCAGgtgaatatcg ... tttgctgcagTGCTGATGCCATTTCTCGAGCAACAAC

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 62 (upstream exon), 74 (downstream exon)
Score: 204

GTTATTGCTCTTTGTGATCATCCATGCTTGTTGGAAAAGGAGGAAACCAAATCATTGTTCAGgtgaatatcg ... tttgctgcagTGCTGATGCCATTTCTCGAGCAACAACAATTCTTGCCTCGATTCCTGGAAGAGCAACTGGAGCATACAGCCACAGCCAG




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Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GTTATTGCTCTTTGTGATCATCCATGCTTGTTGGAAAAGGAGGAAACCAAATCATTGTTCAGgtgaatatcggcacctttatttcatcagcatcaaacagatatgcagagaacttaaatggagatatctagtgcaaacactcacattcctttagtttgctta

- - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cggcacc