1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
TCCTCTTCAGACAAGTGCATACATCGCAGAGAACACATTTGCCATAGCAATTGGTGCTCTTAGTCTCGTACTCTTTGCTCAGCTGATTGGCAATATGCAGgtattgtcatatcttttgttctgaactaggggagaaaatgctccaaggacaataattttcttgttactgtttcagtttactgtaaatgtagtaatgcaag...
species | Oryza sativa |
transcript | LOC_Os09g38580.3 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: TTGGTGCTCTTAGTCTCATACTCTTTGCTCAGCTGATTGGCAATATGCAG ACATACTTGCAGTCCATCAGTAAAAGGCTTGAATAGTGGAGGCTGCGGCAAEST: gi|38473180|gb|CF957312.1|CF957312
genomic: TTGGTGCTCTTAGTCTCGTACTCTTTGCTCAGCTGATTGGCAATATGCAGgtattgtcat ... catcttgtagACATACTTGCAGTCCATCAGTAAAAGGCTTGAAGAGTGGAGGCTCCGGCAA
EST: TTGGTGCTCTTAGTCTCGTACTCTTTGCTCAGCTGATTGGCAATATGCAG ACATACTTGCAGTCCATCAGTAAAAGGCTTGAAGAGTGGAGGCTGCGGCAA
genomic: TTGGTGCTCTTAGTCTCGTACTCTTTGCTCAGCTGATTGGCAATATGCAGgtattgtcat ... catcttgtagACATACTTGCAGTCCATCAGTAAAAGGCTTGAAGAGTGGAGGCTCCGGCAA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TCCTCTTCAGACAAGTGCATACATCGCAGAGAACACATTTGCCATAGCAATTGGTGCTCTTAGTCTCGTACTCTTTGCTCAGCTGATTGGCAATATGCAGgtattgtcatatcttttgttctgaactaggggagaaaatgctccaaggacaataattttcttgttactgtttcagtttactgtaaatgtagtaatgcaag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT