1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
AAAGTGAAAAGGCGTACAAAGACGGAGAAGACCGTGAGCTTGCAGGTCCTTCGGCAGTACTTTGCTGGGAGCCTGAAGGATGCAGCAAAGAGCCTTGGAGgtgagtgacattaacttatcagataaatgcaagattcagctatgtatactttactatttaagtagataccatcagccattaaactattaacaaacccaag...
species | Oryza sativa |
transcript | LOC_Os09g37710.2 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: TCGGCAGTACTTTGCTGGGAGCCTGAAGGATGCAGCAAAGAGCCTTGGAG TGTGCCCAACCACCCTGAAAAGAATATGCAGGCAGCATGGCATAAACCGCTEST: gi|58593687|gb|CF991995.1|CF991995
genomic: TCGGCAGTACTTTGCTGGGAGCCTGAAGGATGCAGCAAAGAGCCTTGGAGgtgagtgaca ... tctctcacagTGTGCCCAACCACCCTGAAAAGAATATGCAGGCAGCATGGCATAAACCGCT
EST: TCGGCAGTACTTTGCTGGGAGCCTGAAGGATGCAGCAAAGAGCCTTGGAG TGTGCCCAACCACCCTGAAAAGAATATGCAGGCAGCATGGCATAAACCGCT
genomic: TCGGCAGTACTTTGCTGGGAGCCTGAAGGATGCAGCAAAGAGCCTTGGAGgtgagtgaca ... tctctcacagTGTGCCCAACCACCCTGAAAAGAATATGCAGGCAGCATGGCATAAACCGCT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AAAGTGAAAAGGCGTACAAAGACGGAGAAGACCGTGAGCTTGCAGGTCCTTCGGCAGTACTTTGCTGGGAGCCTGAAGGATGCAGCAAAGAGCCTTGGAGgtgagtgacattaacttatcagataaatgcaagattcagctatgtatactttactatttaagtagataccatcagccattaaactattaacaaacccaag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG