1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
CAAACCAACAATTTACTGGAATATAAGCAGCCAATGGGAAGGCATTTCTCCAAGCCTGACCACAAGAACACCGAGAAAAATGGAGGGACTAAAATTCATGgtaataaaacatccttcattcttttctctgttatttccatatcattcttctacactgaaagtggtcatatcatcaattatcttttgaatgcattttttttcctgatattacctcctcctcgttttgcag
species | Oryza sativa |
transcript | LOC_Os09g36220.2 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: CAAGCCTGACCACAAGAACACCGAGAAAAATGGAGGGACTAAAATTCATG CATCTAATGATGGCAACTTGATTCCACGGAGGGAAGAGGATGCATCACCGAEST: gi|33676452|gb|CF304691.1|CF304691
genomic: CAAGCCTGACCACAAGAACACCGAGAAAAATGGAGGGACTAAAATTCATGgtaataaaac ... cgttttgcagCATCTAATGATGGCAACTTGATTCCACGGAGGGAAGAGGATGCATCACTGA
EST: CAAGCCTGACCACAAGAACACCGAGAAAAATGGAGGGACTAAAATTCATG CATCTAATGATGGCAACTTGATTCEST: gi|29670836|gb|CB667111.1|CB667111
genomic: CAAGCCTGACCACAAGAACACCGAGAAAAATGGAGGGACTAAAATTCATGgtaataaaac ... cgttttgcagCATCTAATGATGGCAACTTGATTC
EST: CAAGCCTGACCACAAGAACACCGAGAAAAATGGAGGGACTANAATTCATG CATCTAATGATGGCAACTTGATTCCACGGAGGGAAGAGGATGCATCACTGAEST: gi|58691786|gb|CK080473.1|CK080473
genomic: CAAGCCTGACCACAAGAACACCGAGAAAAATGGAGGGACTAAAATTCATGgtaataaaac ... cgttttgcagCATCTAATGATGGCAACTTGATTCCACGGAGGGAAGAGGATGCATCACTGA
EST: CAAGCCTGACCACAAGAACACCGAGAAAAATGGAGGGACTAAAATTCATG CATCTAATGATGGCAACTTGATTCCACGGAGGGAAGAGGATGCATCACCGAEST: gi|218483797|gb|FG943383.1|FG943383
genomic: CAAGCCTGACCACAAGAACACCGAGAAAAATGGAGGGACTAAAATTCATGgtaataaaac ... cgttttgcagCATCTAATGATGGCAACTTGATTCCACGGAGGGAAGAGGATGCATCACTGA
EST: ACTAAAATTCATG CATCTAATGATGGCAACTTGATTCCACGGAGGGAAGAGGATGCATCACCGAEST: gi|29645661|gb|CB650668.1|CB650668
genomic: ACTAAAATTCATGgtaataaaac ... cgttttgcagCATCTAATGATGGCAACTTGATTCCACGGAGGGAAGAGGATGCATCACTGA
EST: CAAGCCTGACCACAAGAACACCGAGAAAAATGGAGGGACTAAAATTCATG CATCTAATGATGGCAACTTGATTCCACGGAGGGAAGAGGATGCATCACTGAEST: gi|29638275|gb|CB643284.1|CB643284
genomic: CAAGCCTGACCACAAGAACACCGAGAAAAATGGAGGGACTAAAATTCATGgtaataaaac ... cgttttgcagCATCTAATGATGGCAACTTGATTCCACGGAGGGAAGAGGATGCATCACTGA
EST: CAAGCCTGACCACAAGAACACCGACAAAAATGGAGGGACTAAAATTCATG CATCTAATGATGGCAACTTGATTCCACGGAGGGAAGAGGATGCATCACTGAEST: gi|33798193|gb|CF324956.1|CF324956
genomic: CAAGCCTGACCACAAGAACACCGAGAAAAATGGAGGGACTAAAATTCATGgtaataaaac ... cgttttgcagCATCTAATGATGGCAACTTGATTCCACGGAGGGAAGAGGATGCATCACTGA
EST: CAAGCCTGACCACAAGAACACCGAGAAAAATGGAGGGACTAAAATTCATG CATCTAATGATGGCAACTTGATTCCACGGAGGGAAGAGGATGCATCACTGAEST: gi|58693630|gb|CK082317.1|CK082317
genomic: CAAGCCTGACCACAAGAACACCGAGAAAAATGGAGGGACTAAAATTCATGgtaataaaac ... cgttttgcagCATCTAATGATGGCAACTTGATTCCACGGAGGGAAGAGGATGCATCACTGA
EST: CAAGCCTGACCACAAGAACACCGAGAAAAATGGAGGGACTAAAATTCATG CATCTAATGATGGCAACTTGATTCCACGGAGGGAAGAGGATGCATCACCGAEST: gi|29679591|gb|CB675866.1|CB675866
genomic: CAAGCCTGACCACAAGAACACCGAGAAAAATGGAGGGACTAAAATTCATGgtaataaaac ... cgttttgcagCATCTAATGATGGCAACTTGATTCCACGGAGGGAAGAGGATGCATCACTGA
EST: CAAGCCTGACCACAAGAACACCGAGAAAAATGGAGGGACTAAAATTCATG CATCTAATGATGGCAACTTGATTCCACGGAGGGAAGAGGATGCATCACTGAEST: gi|29679636|gb|CB675911.1|CB675911
genomic: CAAGCCTGACCACAAGAACACCGAGAAAAATGGAGGGACTAAAATTCATGgtaataaaac ... cgttttgcagCATCTAATGATGGCAACTTGATTCCACGGAGGGAAGAGGATGCATCACTGA
EST: CAAGCCTGACCACAAGAACACCGAGAAAAATGGAGGGACTAAAATTCATG CATCTAATGATGGCAACTTGATTCCACGGAGGGAAGAGGATGCATCACTGAEST: gi|58694414|gb|CK083101.1|CK083101
genomic: CAAGCCTGACCACAAGAACACCGAGAAAAATGGAGGGACTAAAATTCATGgtaataaaac ... cgttttgcagCATCTAATGATGGCAACTTGATTCCACGGAGGGAAGAGGATGCATCACTGA
EST: CAAGCCTGACCACAAGAACACCGAGAAAAATGGAGGGACTAAAATTCATG CATCTAATGATGGCAACTTGATTCCACGGAGGGAAGAGGATGCATCACCGAEST: gi|33675681|gb|CF303920.1|CF303920
genomic: CAAGCCTGACCACAAGAACACCGAGAAAAATGGAGGGACTAAAATTCATGgtaataaaac ... cgttttgcagCATCTAATGATGGCAACTTGATTCCACGGAGGGAAGAGGATGCATCACTGA
EST: CAAGCCTGACCACAAGAACACCGAGAAAAATGGAGGGACTAAAATTCATG CATCTAATGATGGCAACTTGATTCCACGGAGEST: gi|58695431|gb|CK084118.1|CK084118
genomic: CAAGCCTGACCACAAGAACACCGAGAAAAATGGAGGGACTAAAATTCATGgtaataaaac ... cgttttgcagCATCTAATGATGGCAACTTGATTCCACGGAG
EST: CAAGCCTGACCACAAGAACACCGAGAAAAATGGAGGGACTAAAATTCATG CATCTAATGATGGCAACTTGATTCCACGGAGGGAAGAGGATGCATCACCGAEST: gi|29687696|gb|CB683971.1|CB683971
genomic: CAAGCCTGACCACAAGAACACCGAGAAAAATGGAGGGACTAAAATTCATGgtaataaaac ... cgttttgcagCATCTAATGATGGCAACTTGATTCCACGGAGGGAAGAGGATGCATCACTGA
EST: CAAGCCTGACCACAAGAACACCGAGAAAAATGGAGGGACTAAAATTCATG CATCTAATGATGGCAACTTGATTCCACGGAGGGAAGAGGATGCATCACTGAEST: gi|29625624|gb|CB630635.1|CB630635
genomic: CAAGCCTGACCACAAGAACACCGAGAAAAATGGAGGGACTAAAATTCATGgtaataaaac ... cgttttgcagCATCTAATGATGGCAACTTGATTCCACGGAGGGAAGAGGATGCATCACTGA
EST: CAAGCCTGACCACAAGAACACCGAGAAAAATGGAGGGACTAAAATTCATG CATCTAATGATGGCAACTTGATTCCACGGAGGGAAGAGGATGCATCACCGAEST: gi|157650088|gb|EX449722.1|EX449722
genomic: CAAGCCTGACCACAAGAACACCGAGAAAAATGGAGGGACTAAAATTCATGgtaataaaac ... cgttttgcagCATCTAATGATGGCAACTTGATTCCACGGAGGGAAGAGGATGCATCACTGA
EST: CAAGCCTGACCACAAGAACACCGAGAAAAATGGAGGGACTAAAATTCATG CATCTAATGATGGCAACTTGATTCCACGGAGGGAAGAGGATGCATCACTGAEST: gi|66915487|gb|CX102335.1|CX102335
genomic: CAAGCCTGACCACAAGAACACCGAGAAAAATGGAGGGACTAAAATTCATGgtaataaaac ... cgttttgcagCATCTAATGATGGCAACTTGATTCCACGGAGGGAAGAGGATGCATCACTGA
EST: CAAGCCTGACCACAAGAACACCGAGAAAAATGGAGGGACTAAAATTCATG CATCTAATGATGGCAACTTGATTCCACGGAGGGAAGAGGATGCATCACTGA
genomic: CAAGCCTGACCACAAGAACACCGAGAAAAATGGAGGGACTAAAATTCATGgtaataaaac ... cgttttgcagCATCTAATGATGGCAACTTGATTCCACGGAGGGAAGAGGATGCATCACTGA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CAAACCAACAATTTACTGGAATATAAGCAGCCAATGGGAAGGCATTTCTCCAAGCCTGACCACAAGAACACCGAGAAAAATGGAGGGACTAAAATTCATGgtaataaaacatccttcattcttttctctgttatttccatatcattcttctacactgaaagtggtcatatcatcaattatcttttgaatgcattttttttcctgatattacctcctcctcgttttgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG