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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACGGTGGTCGGAGATGTTCCCGTGCGTGGTGGCGAGAGCGAGCACCACGGACATCATCTCCAGCGGCATGGGCGGCACGCGCAGCGGGTCAATTCAACTGgtgagccatcgatctcccccctctcccctcgccgcgagctagctgttcgtccatggcgtctcgccggctcagacacgccatgccatgccatgcgcag

Basic information

species Oryza sativa
transcript LOC_Os09g35760.1
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os09g35760.2 (Oryza sativa), 5'ss of exon 5
lower sequence: GRMZM2G116658_T01 (Zea mays), 5'ss of exon 5
ACGGTGGTCGGAGATGTTCCCGTGCGTGGTGGCGAGAGCGAGCACCACGGACATCATCTCCAGCGGCATGGGCGGCACGCGCAGCGGGTCAATTCAACTGgtgagccatcgatctcccccctctcccctcgccgcgagctagctgttcgtccatggcgtctcgccg-gctcagacacgc-catgcc-atgccatgcgcag------------------------------------------------------------------------------------------
 |||||||||||||||||||||||| | |||||||| |||||||| |||||||||||||| |||||||||||||||||||||||||||||||| || ||||||||| |        |  |  |  | |   |   |  |   || |     |  |  ||  | ||  ||||   ||||| || |||  ||| |     |                                                                                           
TCGGTGGTCGGAGATGTTCCCGTGCATCGTGGCGAGGGCGAGCACGACGGACATCATCTCGAGCGGCATGGGCGGCACGCGCAGCGGGTCAATCCAGCTGgtgagctagtcccactcgtcgcccacacgtactatgcacgcactttggtgacgcgcagtaccaccatgctctcgcacgcacacgcctgtgctagtaataataaaaaaatagcctgtgctagtaataataataataaaaatatgcatgtatacgacgtatacgtgcgtgcttctgggatgcatccatgcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|58672521|gb|CK061207.1|CK061207
EST:     ACATCATCTCCAGCGGCATGGGCGGCACGCGCAGCGGGTCAATTCAACTG                         ATGCACGCGGAGCTGCAGGTGCTGTCGCCGCTGGTGCCGCTACGGGAGGTG
genomic: ACATCATCTCCAGCGGCATGGGCGGCACGCGCAGCGGGTCAATTCAACTGgtgagccatc ... ccatgcgcagATGCACGCGGAGCTGCAGGTGCTGTCGCCGCTGGTGCCGATACGGGAGGTG