1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
GCAAAGTTGAAGATGTTACAAAAGTACAGACACTTCTCTTCAGCGCTACTATACCAGAGTGGGTGAAGAAGgtgcggacatctttaaaatccatttctctttctgattttctttaatattattgtgtggctgataatatatcggtatggatgctgtgatggttatag
species | Oryza sativa |
transcript | LOC_Os09g34910.1 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: AAGTACAGACACTTCTCTTCAGCGCTACTATACCAGAGTGGGTGAAGAAG CTCTCCTTGAGATTTCTCAAATCTGGAAAGAAAAACGGTTGATCTTGTTGGEST: gi|218497043|gb|FG966022.1|FG966022
genomic: AAGTACAGACACTTCTCTTCAGCGCTACTATACCAGAGTGGGTGAAGAAGgtgcggacat ... atggttatagCTCTCCTTGAGATTTCTCAAATCTGGAAAGAAAA-CGGTTGATCTTGTTGG
EST: AAGTACAGACACTTCTCTTCAGCGCTACTATACCAGAGTGGGTGAAGAAG CTCTCCTTGAGATTTCTCAAATCTGGAAAGAAAACGGTTGATCTTGTTGGAEST: gi|29679593|gb|CB675868.1|CB675868
genomic: AAGTACAGACACTTCTCTTCAGCGCTACTATACCAGAGTGGGTGAAGAAGgtgcggacat ... atggttatagCTCTCCTTGAGATTTCTCAAATCTGGAAAGAAAACGGTTGATCTTGTTGGA
EST: AAGTACAGACACTTCTCTTCAGCGCTACTATACCAGAGTGGGTGAAGAAG CTCTCCTTGAGATTTCTCAAATCTGGAAAGAAAACGGTTGATCTTGTTGGAEST: gi|29628388|gb|CB633399.1|CB633399
genomic: AAGTACAGACACTTCTCTTCAGCGCTACTATACCAGAGTGGGTGAAGAAGgtgcggacat ... atggttatagCTCTCCTTGAGATTTCTCAAATCTGGAAAGAAAACGGTTGATCTTGTTGGA
EST: AAGTACAGACACTTCTCTTCAGCGCTACTATACCAGAGTGGGTGAAGAAG CTCTCCTTGAGATTTCTCAAATCTGGAAAGAAAACGGTTGATCTTGTTGGAEST: gi|25802299|gb|CA758260.1|CA758260
genomic: AAGTACAGACACTTCTCTTCAGCGCTACTATACCAGAGTGGGTGAAGAAGgtgcggacat ... atggttatagCTCTCCTTGAGATTTCTCAAATCTGGAAAGAAAACGGTTGATCTTGTTGGA
EST: AAGTACAGACACTTCTCTTCAGCGCTACTATACCAGAGTGGGTGAAGAAG CTCTCCTTGAGATTTCTCAAATCTGGAAAGAAAACGGTTGATCTTGTTGGAEST: gi|29637932|gb|CB642941.1|CB642941
genomic: AAGTACAGACACTTCTCTTCAGCGCTACTATACCAGAGTGGGTGAAGAAGgtgcggacat ... atggttatagCTCTCCTTGAGATTTCTCAAATCTGGAAAGAAAACGGTTGATCTTGTTGGA
EST: AAGTACAGACACTTCTCTTCAGCGCTACTATACCAGAGTGGGTGAAGAAG CTCTCCTTGAGATTTCTCAAATCTGGAAAGAAAACGGTTGATCTTGTTGGAEST: gi|58691703|gb|CK080390.1|CK080390
genomic: AAGTACAGACACTTCTCTTCAGCGCTACTATACCAGAGTGGGTGAAGAAGgtgcggacat ... atggttatagCTCTCCTTGAGATTTCTCAAATCTGGAAAGAAAACGGTTGATCTTGTTGGA
EST: AAGTACAGACACTTCTCTTCAGCGCTACTATACCAGAGTGGGTGAAGAAG CTCTCCTTGAGATTTCTCAAATCTGGAAAGAAAACGGTTGATCTTGTTGGA
genomic: AAGTACAGACACTTCTCTTCAGCGCTACTATACCAGAGTGGGTGAAGAAGgtgcggacat ... atggttatagCTCTCCTTGAGATTTCTCAAATCTGGAAAGAAAACGGTTGATCTTGTTGGA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GCAAAGTTGAAGATGTTACAAAAGTACAGACACTTCTCTTCAGCGCTACTATACCAGAGTGGGTGAAGAAGgtgcggacatctttaaaatccatttctctttctgattttctttaatattattgtgtggctgataatatatcggtatggatgctgtgatggttatag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG