Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAGGACTGGCTACAGTGCACAGGGAACAGGATCTGCTTTGATCATGCCAGTGCTGGACAACCAACTAAAATCACCTAGTCCACTATTACTCCCTGCAAGAgtaaggcactgaagttttactagtttgttacctggcatgtgcattatgattgatcatgtcatgtgatcatctggttgatttgacatgcaagtttatgtgccacccagaaataagtgctcaactgctgatttgaatagctccactagtcctaagaatatttctgatgcatgcag

Basic information

species Oryza sativa
transcript LOC_Os09g32800.2
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os09g32800.2 (Oryza sativa), 5'ss of exon 5
lower sequence: GRMZM2G074386_T01 (Zea mays), 5'ss of exon 5
GAGGACTGGCTACAGTGCACAGGGAACAGGATCTGCTTTGATCATGCCAGTGCTGGACAACCAACTAAAATCACCTAGTCCACTATTACTCCCTGCAAGAgtaaggcactgaagttttactagtttgttacctggcatgtgcattatgattgatcatgtcatgtgatcatctggttgatttgacatgcaagtttatgtgccacccagaaataagtgctcaactgctgatttgaatagctccac-tagtcctaagaatatttctgatgcatgcag
||| ||||| || ||||| |||||||| |||||| ||||||| |||||||| |||||||| |||||||||||||| ||||| ||||| |||||||| || ||||| | ||| |  ||||      | |   |||   |||   |   | | | |  |||    ||| || ||  || ||   |  ||||  || |     ||   | || | | || |  ||| |  ||     || |  ||  ||| |  |  ||| |||   |||    |||
GAGAACTGGTTATAGTGCTCAGGGAACGGGATCTACTTTGATTATGCCAGTCCTGGACAATCAACTAAAATCACCAAGTCCTCTATTGCTCCCTGCCAGGgtaag-ccctgcacattta------tatcttctg-tgtgtttctcgcggt-ggttctgttcaatgagcacctatttaatcaaatttgca--ttca-----caaatataagtgaatggt-gactacaaataacgctaacagcagatagcctaagaaatcttttcaatgtgcacag

upper sequence: LOC_Os09g32800.2 (Oryza sativa), 5'ss of exon 5
lower sequence: GRMZM5G817037_T02 (Zea mays), 5'ss of exon 5
GAGGACTGGCTACAGTGCACAGGGAACAGGATCTGCTTTGATCATGCCAGTGCTGGACAACCAACTAAAATCACCTAGTCCACTATTACTCCCTGCAAGAgtaaggcactgaagttttactagtttgttacctggcatgtgcattatgattgatcatgtcatgtgatc-atctggttgat-----ttgacatg--caagtttatgtgc-cacccagaaataagtgctcaactgctgatttgaatagctccactagtcctaagaatatttctgatgcatgcag
||| || || |||||||| |||||||| |||||| |||||||||||||||| |||||||| |||||||||||||| ||||| |||||||||||||  || ||||  | ||| |  |||     | | |   |||   |||   ||    ||    |||| || | ||  ||||| |  ||        |  ||  ||| |||   | | ||   | || | |  | |  |||    ||    |||    ||     ||||||||| | |    ||  |||||
GAGAACCGGTTACAGTGCTCAGGGAACGGGATCTACTTTGATCATGCCAGTCCTGGACAATCAACTAAAATCACCAAGTCCTCTATTACTCCCTGTCAGGgtaaa-ccctggacatttctatatatatcttctg-tgtgtttcttgcagttacatatgttatttaatggatctgttcaataaacaccaatttgaccaaatttgcattcacatatataagtgaacggt-gactagaaataacgataatagcagatagcctaagaatctcttcactgtgtgcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|88240063|gb|CI239225.1|CI239225
EST:     GACAACCAACTAAAATCACCTAGTCCACTATTACTCCCTGCAAGA                         GATGCCGTCACACCTTTGTCGGAGACAGAGGCGGTCGATTTAGTGAAGGAT
genomic: GACAACCAACTAAAATCACCTAGTCCACTATTACTCCCTGCAAGAgtaaggcact ... atgcatgcagGATGCCGTCACACCTTTGTCGGAGACAGAGGCGGTCGATTTAGTGAAGGAT
EST: gi|33804936|gb|CF328345.1|CF328345
EST:     TGCTGGACAACCAACTAAAATCACCTAGTCCACTATTACTCCCTGCAAGA                         GATGCCGTCACACCTTTGTCGG
genomic: TGCTGGACAACCAACTAAAATCACCTAGTCCACTATTACTCCCTGCAAGAgtaaggcact ... atgcatgcagGATGCCGTCACACCTTTGTCGG
EST: gi|88532692|gb|CI462194.1|CI462194
EST:     CACCTAGTCCACTATTACTCCCTGCAAGA                         GATGCCGTCACACCTTTGTCGGAGACAGAGGCGGTCGATTTAGTGAAGGAT
genomic: CACCTAGTCCACTATTACTCCCTGCAAGAgtaaggcact ... atgcatgcagGATGCCGTCACACCTTTGTCGGAGACAGAGGCGGTCGATTTAGTGAAGGAT
EST: gi|55436537|gb|CV731403.1|CV731403
EST:     TGCTGGACAACCAACTAAAATCACCTAGTCCACTATTACTCCCTGCAAGA                         GATGCCGTCACACCTTTGTCGGAGACAGAGGCGGTCGATTTAGTGAAGGAT
genomic: TGCTGGACAACCAACTAAAATCACCTAGTCCACTATTACTCCCTGCAAGAgtaaggcact ... atgcatgcagGATGCCGTCACACCTTTGTCGGAGACAGAGGCGGTCGATTTAGTGAAGGAT
EST: gi|86534653|gb|CI174859.1|CI174859
EST:     TGCTGGACAACCAACTAAAATCACCTAGTCCACTATTACTCCCTGCAAGA                         GATGCCGTCACACCTTTGTCGGAGACAGAGGCGGTCGATTTAGTGAAGGAT
genomic: TGCTGGACAACCAACTAAAATCACCTAGTCCACTATTACTCCCTGCAAGAgtaaggcact ... atgcatgcagGATGCCGTCACACCTTTGTCGGAGACAGAGGCGGTCGATTTAGTGAAGGAT
EST: gi|88586971|gb|CI704694.1|CI704694
EST:     TGCTGGACAACCAACTAAAATCACCTAGTCCACTATTACTCCCTGCAAGA                         GATGCCGTCACACCTTTGTCGGAGACAGAGGCGGTCGATTTAGTGAAGGAT
genomic: TGCTGGACAACCAACTAAAATCACCTAGTCCACTATTACTCCCTGCAAGAgtaaggcact ... atgcatgcagGATGCCGTCACACCTTTGTCGGAGACAGAGGCGGTCGATTTAGTGAAGGAT
EST: gi|33818149|gb|CF334903.1|CF334903
EST:     TAAAATCACCTAGTCCACTATTACTCCCTGCAAGA                         GATGCCGTCACACCTTTGTCGGAGACAGAGGCGGTCGATTTAGTGAAGGAT
genomic: TAAAATCACCTAGTCCACTATTACTCCCTGCAAGAgtaaggcact ... atgcatgcagGATGCCGTCACACCTTTGTCGGAGACAGAGGCGGTCGATTTAGTGAAGGAT
EST: gi|218499612|gb|FG949767.1|FG949767
EST:     TGCTGGACAACCAACTAAAATCACCTAGTCCACTATTACTCCCTGCAAGA                         GATGCCGTCACACCTTTGTCGGAGACAGAGGCGGTCGATTTAGTGAAGGAT
genomic: TGCTGGACAACCAACTAAAATCACCTAGTCCACTATTACTCCCTGCAAGAgtaaggcact ... atgcatgcagGATGCCGTCACACCTTTGTCGGAGACAGAGGCGGTCGATTTAGTGAAGGAT
EST: gi|88250654|gb|CI348884.1|CI348884
EST:     TGCTGGACAACCAACTAAAATCACCTAGTCCACTATTACTCCCTGCAAGA                         GATGCCGTCACACCTTTGTCGGAGACAGAGGCGGTCGATTTAGTGAAGGAT
genomic: TGCTGGACAACCAACTAAAATCACCTAGTCCACTATTACTCCCTGCAAGAgtaaggcact ... atgcatgcagGATGCCGTCACACCTTTGTCGGAGACAGAGGCGGTCGATTTAGTGAAGGAT
EST: gi|88253970|gb|CI352596.1|CI352596
EST:     TGCTGGACAACCAACTAAAATCACCTAGTCCACTATTACTCCCTGCAAGA                         GATGCCGTCACACCTTTGTCGGAGACAGAGGCGGTCGATTTAGTGAAGGAT
genomic: TGCTGGACAACCAACTAAAATCACCTAGTCCACTATTACTCCCTGCAAGAgtaaggcact ... atgcatgcagGATGCCGTCACACCTTTGTCGGAGACAGAGGCGGTCGATTTAGTGAAGGAT
EST: gi|86527433|gb|CI167639.1|CI167639
EST:     TGCTGGACAACCAACTAAAATCACCTAGTCCACTATTACTCCCTGCAAGA                         GATGCCGTCACACCTTTGTCGGAGACAGAGGCGGTCGATTTAGTGAAGGAT
genomic: TGCTGGACAACCAACTAAAATCACCTAGTCCACTATTACTCCCTGCAAGAgtaaggcact ... atgcatgcagGATGCCGTCACACCTTTGTCGGAGACAGAGGCGGTCGATTTAGTGAAGGAT
EST: gi|89165488|gb|CI102578.1|CI102578
EST:     TGCTGGACAACCAACTAAAATCACCTAGTCCACTATTACTCCCTGCAAGA                         GATGCCGTCACACCTTTGTCGGAGACAGAGGCGGTCGATTTAGTGAAGGAT
genomic: TGCTGGACAACCAACTAAAATCACCTAGTCCACTATTACTCCCTGCAAGAgtaaggcact ... atgcatgcagGATGCCGTCACACCTTTGTCGGAGACAGAGGCGGTCGATTTAGTGAAGGAT
EST: gi|88583462|gb|CI700944.1|CI700944
EST:     TGCTGGACAACCAACTAAAATCACCTAGTCCACTATTACTCCCTGCAAGA                         GATGCCGTCACACCTTTGTCGGAGACAGAGGCGGTCGATTTAGTGAAGGAT
genomic: TGCTGGACAACCAACTAAAATCACCTAGTCCACTATTACTCCCTGCAAGAgtaaggcact ... atgcatgcagGATGCCGTCACACCTTTGTCGGAGACAGAGGCGGTCGATTTAGTGAAGGAT
EST: gi|88216666|gb|CI214766.1|CI214766
EST:     TGCTGGACAACCAACTAAAATCACCTAGTCCACTATTACTCCCTGCAAGA                         GATGCCGTCACACCTTTGTCGGAGACAGAGGCGGTCGATTTAGTGAAGGAT
genomic: TGCTGGACAACCAACTAAAATCACCTAGTCCACTATTACTCCCTGCAAGAgtaaggcact ... atgcatgcagGATGCCGTCACACCTTTGTCGGAGACAGAGGCGGTCGATTTAGTGAAGGAT
EST: gi|15855480|gb|BI808292.1|BI808292
EST:     TACTCCCTGCAAGA                         GATGCCGTCACACCTTTGTCGGAGACAGA-GCGGTCGATTTAGTGAAGGAT
genomic: TACTCCCTGCAAGAgtaaggcact ... atgcatgcagGATGCCGTCACACCTTTGTCGGAGACAGAGGCGGTCGATTTAGTGAAGGAT
EST: gi|86593168|gb|CI255630.1|CI255630
EST:     TGCTGGACAACCAACTAAAATCACCTAGTCCACTATTACTCCCTGCAAGA                         GATGCCGTCACACCTTTGTCGGAGACAGAGGCGGTCGATTTAGTGAAGGAT
genomic: TGCTGGACAACCAACTAAAATCACCTAGTCCACTATTACTCCCTGCAAGAgtaaggcact ... atgcatgcagGATGCCGTCACACCTTTGTCGGAGACAGAGGCGGTCGATTTAGTGAAGGAT
EST: gi|87032229|gb|CI262011.1|CI262011
EST:     TGCTGGACAACCAACTAAAATCACCTAGTCCACTATTACTCCCTGCAAGA                         GATGCCGTCACACCTTTGTCGGAGACAGAGGCGGTCGATTTAGTGAAGGAT
genomic: TGCTGGACAACCAACTAAAATCACCTAGTCCACTATTACTCCCTGCAAGAgtaaggcact ... atgcatgcagGATGCCGTCACACCTTTGTCGGAGACAGAGGCGGTCGATTTAGTGAAGGAT
EST: gi|33806416|gb|CF329086.1|CF329086
EST:     GCTGGACAACCACACTAAAATCACCTAGTCCACTATTACTCCCTGCAAGA                         GATGCCGTCACACCTTTGTCGGAGACAGAGGCGGTCGATTTAGTGAAGGAT
genomic: GCTGGACAACCA-ACTAAAATCACCTAGTCCACTATTACTCCCTGCAAGAgtaaggcact ... atgcatgcagGATGCCGTCACACCTTTGTCGGAGACAGAGGCGGTCGATTTAGTGAAGGAT
EST: gi|38472549|gb|CF956681.1|CF956681
EST:     TGCTGGACAACCAACTAAAATCACCTAGTCCACTATTACTCCCTGCAAGA                         GATGCCGTCACACCTTTGTCGGAGACAGAGGCGGTCGATTTAGTGAAGGAT
genomic: TGCTGGACAACCAACTAAAATCACCTAGTCCACTATTACTCCCTGCAAGAgtaaggcact ... atgcatgcagGATGCCGTCACACCTTTGTCGGAGACAGAGGCGGTCGATTTAGTGAAGGAT
EST: gi|88270878|gb|CI380178.1|CI380178
EST:     CCACTATTACTCCCTGCAAGA                         GATGCCGTCACACCTTTGTCGGAGACAGAGGCGGTCGATTTAGTGAAGGAT
genomic: CCACTATTACTCCCTGCAAGAgtaaggcact ... atgcatgcagGATGCCGTCACACCTTTGTCGGAGACAGAGGCGGTCGATTTAGTGAAGGAT
EST: gi|33660627|gb|CF291594.1|CF291594
EST:     TGCTGGACAACCAACTAAAATCACCTAGTCCACTATTACTCCCTGCAAGA                         GATGCCGTCACACCTTTGTCG
genomic: TGCTGGACAACCAACTAAAATCACCTAGTCCACTATTACTCCCTGCAAGAgtaaggcact ... atgcatgcagGATGCCGTCACACCTTTGTCG
EST: gi|88956647|gb|CI092839.1|CI092839
EST:     TGCTGGACAACCAACTAAAATTACCTAGTCCACTATTACTCCCCGCAAGA                         GATGCCGTCACACCTTTGTCGGAGACAGAGGCGGTCGATTTAGTGAAGGAT
genomic: TGCTGGACAACCAACTAAAATCACCTAGTCCACTATTACTCCCTGCAAGAgtaaggcact ... atgcatgcagGATGCCGTCACACCTTTGTCGGAGACAGAGGCGGTCGATTTAGTGAAGGAT
EST: gi|58608080|gb|CK036113.1|CK036113
EST:     TGCTGGACAACCAACTAAAATCACCTAGTCCACTATTACTCCCTGCAAGA                         GATGCCGTCACACCTTTGTCGGAGACAGAGGCGGTCGATTTAGTGAAGGAT
genomic: TGCTGGACAACCAACTAAAATCACCTAGTCCACTATTACTCCCTGCAAGAgtaaggcact ... atgcatgcagGATGCCGTCACACCTTTGTCGGAGACAGAGGCGGTCGATTTAGTGAAGGAT
EST: gi|86545869|gb|CI186075.1|CI186075
EST:     TGCTGGACAACCAACTAAAATCACCTAGTCCACTATTACTCCCTGCAAGA                         GATGCCGTCACACCTTTGTCGGAGACAGAGGCGGTCGATTTAGTGAAGGAT
genomic: TGCTGGACAACCAACTAAAATCACCTAGTCCACTATTACTCCCTGCAAGAgtaaggcact ... atgcatgcagGATGCCGTCACACCTTTGTCGGAGACAGAGGCGGTCGATTTAGTGAAGGAT
EST: gi|88535226|gb|CI464012.1|CI464012
EST:     TCACCTAGTCCACTATTACTCCCTGCAAGA                         GATGCCGTCACACCTTTGTCGGAGACAGAGGCGGTCGATTTAGTGAAGGAT
genomic: TCACCTAGTCCACTATTACTCCCTGCAAGAgtaaggcact ... atgcatgcagGATGCCGTCACACCTTTGTCGGAGACAGAGGCGGTCGATTTAGTGAAGGAT
EST: gi|33683337|gb|CF311576.1|CF311576
EST:     TGCTGGACAACCAACTAAAATCACCTAGTCCACTATTACTCCCTGCAAGA                         GATGCCGTCACACCTTTGTCGG
genomic: TGCTGGACAACCAACTAAAATCACCTAGTCCACTATTACTCCCTGCAAGAgtaaggcact ... atgcatgcagGATGCCGTCACACCTTTGTCGG
EST: gi|86527635|gb|CI167841.1|CI167841
EST:     TGCTGGACAACCAACTAAAATCACCTAGTCCACTATTACTCCCTGCAAGA                         GATGCCGTCACACCTTTGTCGGAGACAGAGGCGGTCGATTTAGTGAAGGAT
genomic: TGCTGGACAACCAACTAAAATCACCTAGTCCACTATTACTCCCTGCAAGAgtaaggcact ... atgcatgcagGATGCCGTCACACCTTTGTCGGAGACAGAGGCGGTCGATTTAGTGAAGGAT
EST: gi|88200971|gb|CI201326.1|CI201326
EST:     TGCTGGACAACCAACTAAAATCACCTAGTCCACTATTACTCCCTGCAAGA                         GATGCCGTCACACCTTTGTCGGAGACAGAGGCGGTCGATTTAGTGAAGGAT
genomic: TGCTGGACAACCAACTAAAATCACCTAGTCCACTATTACTCCCTGCAAGAgtaaggcact ... atgcatgcagGATGCCGTCACACCTTTGTCGGAGACAGAGGCGGTCGATTTAGTGAAGGAT
EST: gi|88836780|gb|CI014781.1|CI014781
EST:     TGCTGGACAACCAACTAAAATCACCTAGTCCACTATTACTCCCTGCAAGA                         GATGCCGTCACACCTTTGTCGGAGACAGAGGCGGTCGATTTAGTGAAGGAT
genomic: TGCTGGACAACCAACTAAAATCACCTAGTCCACTATTACTCCCTGCAAGAgtaaggcact ... atgcatgcagGATGCCGTCACACCTTTGTCGGAGACAGAGGCGGTCGATTTAGTGAAGGAT
EST: gi|86511751|gb|CI154384.1|CI154384
EST:     TGCTGGACAACCAACTAAAATCACCTAGTCCAGTATTACTCCCTGCAAGA                         GATGCCGTCACACCTTTGTCGGAGACAGAGGCGGTCGATTTAGTGAAGGAT
genomic: TGCTGGACAACCAACTAAAATCACCTAGTCCACTATTACTCCCTGCAAGAgtaaggcact ... atgcatgcagGATGCCGTCACACCTTTGTCGGAGACAGAGGCGGTCGATTTAGTGAAGGAT
EST: gi|88386674|gb|CI682818.1|CI682818
EST:     TGCTGGACAACCAACTAAAATCACCTAGTCCACTATTACTCCCTGCAAGA                         GATGCCGTCACACCTTTGTCGGAGACAGAGGCGGTCGATTTAGTGAAGGAT
genomic: TGCTGGACAACCAACTAAAATCACCTAGTCCACTATTACTCCCTGCAAGAgtaaggcact ... atgcatgcagGATGCCGTCACACCTTTGTCGGAGACAGAGGCGGTCGATTTAGTGAAGGAT
EST: gi|86413520|gb|CI019105.1|CI019105
EST:     TGCTGGACAACCAACTAAAATCACCTAGTCCACTATTACTCCCTGCAAGA                         GATGCCGTCACACCTTTGTCGGAGACAGAGGCGGTCGATTTAGTGAAGGAT
genomic: TGCTGGACAACCAACTAAAATCACCTAGTCCACTATTACTCCCTGCAAGAgtaaggcact ... atgcatgcagGATGCCGTCACACCTTTGTCGGAGACAGAGGCGGTCGATTTAGTGAAGGAT
EST: gi|3763562|gb|AU030314.1|AU030314
EST:     TGCTGGACAACCAACTAAAATCNCCTAGTCCACTATTACTCCCTGCAAGA                         GATGCCGTCACACCTTTGTCGGAGACAGAGGCGGTCGATTTAGTGAAGGAT
genomic: TGCTGGACAACCAACTAAAATCACCTAGTCCACTATTACTCCCTGCAAGAgtaaggcact ... atgcatgcagGATGCCGTCACACCTTTGTCGGAGACAGAGGCGGTCGATTTAGTGAAGGAT
EST: gi|88550971|gb|CI480460.1|CI480460
EST:     ACAACCAACTAAAATCACCTAGTCCACTATTACTCCCTGCAAGA                         GATGCCGTCACACCTTTGTCGGAGACAGAGGCGGTCGATTTAGTGAAGGAT
genomic: ACAACCAACTAAAATCACCTAGTCCACTATTACTCCCTGCAAGAgtaaggcact ... atgcatgcagGATGCCGTCACACCTTTGTCGGAGACAGAGGCGGTCGATTTAGTGAAGGAT
EST: gi|88554285|gb|CI484454.1|CI484454
EST:     TGGACAACCAGCTGAAATCACCTAGTCCACTATTACTCCCTGCAAGA                         GATGCCGTCACACCTTTNTCGGAGACAGAGGCGGTCGATTTANTGAAGGAT
genomic: TGGACAACCAACTAAAATCACCTAGTCCACTATTACTCCCTGCAAGAgtaaggcact ... atgcatgcagGATGCCGTCACACCTTTGTCGGAGACAGAGGCGGTCGATTTAGTGAAGGAT
EST: gi|55434860|gb|CV730555.1|CV730555
EST:     TGCTGGACAACCAACTAAAATCACCTAGTCCACTATTACTCCCTGCAAGA                         GATGCCGTCACACCTTTGTCGGAGACAGAGGCGGTCGATTTAGTGAAGGAT
genomic: TGCTGGACAACCAACTAAAATCACCTAGTCCACTATTACTCCCTGCAAGAgtaaggcact ... atgcatgcagGATGCCGTCACACCTTTGTCGGAGACAGAGGCGGTCGATTTAGTGAAGGAT
EST: gi|86823995|gb|CI260689.1|CI260689
EST:     TGCTGGACAACCAACTAAAATCACCTAGTCCACTATTACTCCCTGCAAGA                         GATGCCGTCACACCTTTGTCGGAGACAGAGGCGGTCGATTTAGTGAAGGAT
genomic: TGCTGGACAACCAACTAAAATCACCTAGTCCACTATTACTCCCTGCAAGAgtaaggcact ... atgcatgcagGATGCCGTCACACCTTTGTCGGAGACAGAGGCGGTCGATTTAGTGAAGGAT
EST: gi|33818729|gb|CF335188.1|CF335188
EST:     GCTGGACAACCACACTAAAATCACCTAGTCCACTATTACTCCCTGCAAGA                         GATGCCGTCACACCTTTGTCGGAGACAGAGGCGGTCGATTTAGTGAAGGAT
genomic: GCTGGACAACCA-ACTAAAATCACCTAGTCCACTATTACTCCCTGCAAGAgtaaggcact ... atgcatgcagGATGCCGTCACACCTTTGTCGGAGACAGAGGCGGTCGATTTAGTGAAGGAT
EST: gi|88405112|gb|CI685561.1|CI685561
EST:     TGCTGGACAACCAACTAAAATCACCTAGTCCACTATTACTCCCTGCAAGA                         GATGCCGTCACACCTTTGTCGGAGACAGAGGCGGTCGATTTAGTGAAGGAT
genomic: TGCTGGACAACCAACTAAAATCACCTAGTCCACTATTACTCCCTGCAAGAgtaaggcact ... atgcatgcagGATGCCGTCACACCTTTGTCGGAGACAGAGGCGGTCGATTTAGTGAAGGAT
EST: gi|44669011|gb|CR282445.1|CR282445
EST:     CTATTACTCCCTGCAAGA                         GATGCCGTCACACCTTTGTCGGAGACAGAGGCGGTCGATTTAGTGAAGGAT
genomic: CTATTACTCCCTGCAAGAgtaaggcact ... atgcatgcagGATGCCGTCACACCTTTGTCGGAGACAGAGGCGGTCGATTTAGTGAAGGAT
EST: gi|33683336|gb|CF311575.1|CF311575
EST:     GCTGGACAACCAACTANAAATCACCTAGTCCACTATTACTCCCTGCAAGA                         GATGCCGTCACACCTTTGTCGGAGACAGAGGCGGTCGATTTAGTGAAGGAT
genomic: GCTGGACAACCAACTA-AAATCACCTAGTCCACTATTACTCCCTGCAAGAgtaaggcact ... atgcatgcagGATGCCGTCACACCTTTGTCGGAGACAGAGGCGGTCGATTTAGTGAAGGAT
EST: gi|86524528|gb|CI164734.1|CI164734
EST:     TGCTGGACAACCAACTAAAATCACCTAGTCCACTATTACTCCCTGCAAGA                         GATGCCGTCACACCTTTGTCGGAGACAGAGGCGGTCGATTTAGTGAAGGAT
genomic: TGCTGGACAACCAACTAAAATCACCTAGTCCACTATTACTCCCTGCAAGAgtaaggcact ... atgcatgcagGATGCCGTCACACCTTTGTCGGAGACAGAGGCGGTCGATTTAGTGAAGGAT
EST: gi|89162793|gb|CI099683.1|CI099683
EST:     TGCTGGACAACCAACTAAAATCACCTAGTCCACTATTACTCCCTGCAAGA                         GATGCCGTCACACCTTTGTCGGAGACAGAGGCGGTCGATTTAGTGAAGGAT
genomic: TGCTGGACAACCAACTAAAATCACCTAGTCCACTATTACTCCCTGCAAGAgtaaggcact ... atgcatgcagGATGCCGTCACACCTTTGTCGGAGACAGAGGCGGTCGATTTAGTGAAGGAT
EST: gi|33660628|gb|CF291595.1|CF291595
EST:     TGCTGGACAACCAACTAAAATCACCTAGTCCACTATTACTCCCTGCAAGA                         GATGCCGTCACACCTTTGTCGGAGACAGAGGCGGTCGATTTAGTGAAGGAT
genomic: TGCTGGACAACCAACTAAAATCACCTAGTCCACTATTACTCCCTGCAAGAgtaaggcact ... atgcatgcagGATGCCGTCACACCTTTGTCGGAGACAGAGGCGGTCGATTTAGTGAAGGAT
EST: gi|88830065|gb|CI074737.1|CI074737
EST:     TGCTGGACAACCAACTAAAATCACCTAGTCCACTATTACTCCCTGCAAGA                         GATGCCGTCACACCTTTGTCGGAGACAGAGGCGGTCGATTTAGTGAAGGAT
genomic: TGCTGGACAACCAACTAAAATCACCTAGTCCACTATTACTCCCTGCAAGAgtaaggcact ... atgcatgcagGATGCCGTCACACCTTTGTCGGAGACAGAGGCGGTCGATTTAGTGAAGGAT
EST: gi|86592540|gb|CI253221.1|CI253221
EST:     TGCTGGACAACCAACTAAAATCACCTAGTCCACTATTACTCCCTGCAAGA                         GATGCCGTCACACCTTTGTCGGAGACAGAGGCGGTCGATTTAGTGAAGGAT
genomic: TGCTGGACAACCAACTAAAATCACCTAGTCCACTATTACTCCCTGCAAGAgtaaggcact ... atgcatgcagGATGCCGTCACACCTTTGTCGGAGACAGAGGCGGTCGATTTAGTGAAGGAT
EST: gi|86258837|gb|CI000066.1|CI000066
EST:     TGCTGGACAACCAACTAAAATCACCTAGTCCACTATTACTCCCTGCAAGA                         GATGCCGTCACACCTTTGTCGGAGACAGAGGCGGTCGATTTAGTGAAGGAT
genomic: TGCTGGACAACCAACTAAAATCACCTAGTCCACTATTACTCCCTGCAAGAgtaaggcact ... atgcatgcagGATGCCGTCACACCTTTGTCGGAGACAGAGGCGGTCGATTTAGTGAAGGAT
EST: gi|88428151|gb|CI557045.1|CI557045
EST:     TCCACTATTACTCCCTGCAAGA                         GATGCCGTCACACCTTTGTCGGAGACAGAGGCGGTCGATTTAGTGAAGGAT
genomic: TCCACTATTACTCCCTGCAAGAgtaaggcact ... atgcatgcagGATGCCGTCACACCTTTGTCGGAGACAGAGGCGGTCGATTTAGTGAAGGAT
EST: gi|88533469|gb|CI461031.1|CI461031
EST:     TGCTGGACAACCAACTAAAATCACCTAGTCCACTATTACTCCCTGCAAGA                         GATGCCGTCACACCTTTGTCGGAGACAGAGGCGGTCGATTTAGTGAAGGAT
genomic: TGCTGGACAACCAACTAAAATCACCTAGTCCACTATTACTCCCTGCAAGAgtaaggcact ... atgcatgcagGATGCCGTCACACCTTTGTCGGAGACAGAGGCGGTCGATTTAGTGAAGGAT
EST: gi|89187440|gb|CI264259.1|CI264259
EST:     TGCTGGACAACCAACTAAAATCACCTAGTCCACTATTACTCCCTGCAAGA                         GATGCCGTCACACCTTTGTCGGAGACAGAGGCGGTCGATTTAGTGAAGGAT
genomic: TGCTGGACAACCAACTAAAATCACCTAGTCCACTATTACTCCCTGCAAGAgtaaggcact ... atgcatgcagGATGCCGTCACACCTTTGTCGGAGACAGAGGCGGTCGATTTAGTGAAGGAT
EST: gi|88958729|gb|CI381532.1|CI381532
EST:     CAACCAACTAAAATCACCTAGTCCACTATTACTCCCTGCAAGA                         GATGCCGTCACACCTTTGTCGGAGACAGAGGCGGTCGATTTAGTGAAGGAT
genomic: CAACCAACTAAAATCACCTAGTCCACTATTACTCCCTGCAAGAgtaaggcact ... atgcatgcagGATGCCGTCACACCTTTGTCGGAGACAGAGGCGGTCGATTTAGTGAAGGAT
EST: gi|33803802|gb|CF327775.1|CF327775
EST:     GCTGGACAACCAAACTAAAATCACCTAGTCCACTATTACTCCCTGCAAGA                         GATGCCGTCACACCTTTGTCGGAGACAGAGGCGGTCGATTTAGTGAAGGAT
genomic: GCTGGACAACC-AACTAAAATCACCTAGTCCACTATTACTCCCTGCAAGAgtaaggcact ... atgcatgcagGATGCCGTCACACCTTTGTCGGAGACAGAGGCGGTCGATTTAGTGAAGGAT
EST: gi|88907381|gb|CI090175.1|CI090175
EST:     TGCTGGACAACCAACTAAAATCACCTAGTCCACTATTACTCCCTGCAAGA                         GATGCCGTCACACCTTTGTCGGAGACAGAGGCGGTCGATTTAGTGAAGGAT
genomic: TGCTGGACAACCAACTAAAATCACCTAGTCCACTATTACTCCCTGCAAGAgtaaggcact ... atgcatgcagGATGCCGTCACACCTTTGTCGGAGACAGAGGCGGTCGATTTAGTGAAGGAT
EST: gi|88211460|gb|CI211100.1|CI211100
EST:     TGCTGGACAACCAACTAAAATCACCTAGTCCACTATTACTCCCTGCAAGA                         GATGCCGTCACACCTTTGTCGGAGACAGAGGCGGTCGATTTAGTGAAGGAT
genomic: TGCTGGACAACCAACTAAAATCACCTAGTCCACTATTACTCCCTGCAAGAgtaaggcact ... atgcatgcagGATGCCGTCACACCTTTGTCGGAGACAGAGGCGGTCGATTTAGTGAAGGAT
EST: gi|218497460|gb|FG955186.1|FG955186
EST:     TGCTGGACAACCAACTAAAATCACCTAGTCCAATATTACTCCCTGCAAGA                         GATGCCGTGAAACCTTTGTCGGAGACAGAGGCGGTCGATATAGTGAAGGAT
genomic: TGCTGGACAACCAACTAAAATCACCTAGTCCACTATTACTCCCTGCAAGAgtaaggcact ... atgcatgcagGATGCCGTCACACCTTTGTCGGAGACAGAGGCGGTCGATTTAGTGAAGGAT
EST: gi|87035386|gb|CI190008.1|CI190008
EST:     TGCTGGACAACCAACTAAAATCACCTAGTCCACTATTACTCCCTGCAAGA                         GATGCCGTCACACCTTTGTCGGAGACAGAGGCGGTCGATTTAGTGAAGGAT
genomic: TGCTGGACAACCAACTAAAATCACCTAGTCCACTATTACTCCCTGCAAGAgtaaggcact ... atgcatgcagGATGCCGTCACACCTTTGTCGGAGACAGAGGCGGTCGATTTAGTGAAGGAT
EST: gi|88829933|gb|CI004971.1|CI004971
EST:     TGCTGGACAACCAACTAAAATCACCTAGTCCACTATTACTCCCTGCAAGA                         GATGCCGTCACACCTTTGTCGGAGACAGAGGCGGTCGATTTAGTGAAGGAT
genomic: TGCTGGACAACCAACTAAAATCACCTAGTCCACTATTACTCCCTGCAAGAgtaaggcact ... atgcatgcagGATGCCGTCACACCTTTGTCGGAGACAGAGGCGGTCGATTTAGTGAAGGAT
EST: gi|33823301|gb|CF337451.1|CF337451
EST:     TGCTGGACAACCAACTAAAATCACCTAGTCCACTATTACTCCCTGCAAGA                         GATGCCGTCACACCTTTGTCGG
genomic: TGCTGGACAACCAACTAAAATCACCTAGTCCACTATTACTCCCTGCAAGAgtaaggcact ... atgcatgcagGATGCCGTCACACCTTTGTCGG
EST: gi|33803800|gb|CF327774.1|CF327774
EST:     TGCTGGACAACCAACTAAAATCACCTAGTCCACTATTACTCCCTGCAAGA                         GATGCCGTCACACCTTTGTCGGAG
genomic: TGCTGGACAACCAACTAAAATCACCTAGTCCACTATTACTCCCTGCAAGAgtaaggcact ... atgcatgcagGATGCCGTCACACCTTTGTCGGAG
EST: gi|86593079|gb|CI255541.1|CI255541
EST:     TGCTGGACAACCAACTAAAATCACCTAGTCCACTATTACTCCCTGCAAGA                         GATGCCGTCACACCTTTGTCGGAGACAGAGGCGGTCGATTTAGTGAAGGAT
genomic: TGCTGGACAACCAACTAAAATCACCTAGTCCACTATTACTCCCTGCAAGAgtaaggcact ... atgcatgcagGATGCCGTCACACCTTTGTCGGAGACAGAGGCGGTCGATTTAGTGAAGGAT
EST: gi|396941603|gb|HO188260.1|HO188260
EST:     TGCTGGACAACCAACTAAAATCACCTAGTCCACTATTACTCCCTGCAAGA                         GATGCCGTCACACCTTTGTCGGAGACAGAGGCGGTCGATTTAGTGAAGGAT
genomic: TGCTGGACAACCAACTAAAATCACCTAGTCCACTATTACTCCCTGCAAGAgtaaggcact ... atgcatgcagGATGCCGTCACACCTTTGTCGGAGACAGAGGCGGTCGATTTAGTGAAGGAT
EST: gi|86522336|gb|CI162542.1|CI162542
EST:     TGCTGGACAACCAACTAAAATCACCTAGTCCACTATTACTCCCTGCAAGA                         GATGCCGTCACACCTTTGTCGGAGACAGAGGCGGTCGATTTAGTGAAGGAT
genomic: TGCTGGACAACCAACTAAAATCACCTAGTCCACTATTACTCCCTGCAAGAgtaaggcact ... atgcatgcagGATGCCGTCACACCTTTGTCGGAGACAGAGGCGGTCGATTTAGTGAAGGAT
EST: gi|88238498|gb|CI238347.1|CI238347
EST:     TGCTGGACAACCAACTAAAATCACCTAGTCCACTATTACTCCCTGCAAGA                         GATGCCGTCACACCTTTGTCGGAGACAGAGGCGGTCGATTTAGTGAAGGAT
genomic: TGCTGGACAACCAACTAAAATCACCTAGTCCACTATTACTCCCTGCAAGAgtaaggcact ... atgcatgcagGATGCCGTCACACCTTTGTCGGAGACAGAGGCGGTCGATTTAGTGAAGGAT
EST: gi|88391989|gb|CI683811.1|CI683811
EST:     TGCTGGACAACCAACTAAAATCACCTAGTCCACTATTACTCCCTGCAAGA                         GATGCCGTCACACCTTTGTCGGAGACAGAGGCGGTCGATTTAGTGAAGGAT
genomic: TGCTGGACAACCAACTAAAATCACCTAGTCCACTATTACTCCCTGCAAGAgtaaggcact ... atgcatgcagGATGCCGTCACACCTTTGTCGGAGACAGAGGCGGTCGATTTAGTGAAGGAT
EST: gi|86503207|gb|CI145840.1|CI145840
EST:     TGCTGGACAACCAACTAAAATCACCTAGTCCACTATTACTCCCTGCAAGA                         GATGCCGTCACACCTTTGTCGGAGACAGAGCCGGTCGATTTAGTGAAGGAT
genomic: TGCTGGACAACCAACTAAAATCACCTAGTCCACTATTACTCCCTGCAAGAgtaaggcact ... atgcatgcagGATGCCGTCACACCTTTGTCGGAGACAGAGGCGGTCGATTTAGTGAAGGAT
EST: gi|55439809|gb|CV733215.1|CV733215
EST:     TGCTGGACAACCAACTAAAATCACCTAGTCCACTATTACTCCCTGCAAGA                         GATGCCGTCACACCTTTGTCGGAGACAGAGGCGGTCGATTTAGTGAAGGAT
genomic: TGCTGGACAACCAACTAAAATCACCTAGTCCACTATTACTCCCTGCAAGAgtaaggcact ... atgcatgcagGATGCCGTCACACCTTTGTCGGAGACAGAGGCGGTCGATTTAGTGAAGGAT
EST: gi|89199025|gb|CI253099.1|CI253099
EST:     TGCTGGACAACCAACTAAAATCACCTAGTCCACTATTACTCCCTGCAAGA                         GATGCCGTCACACCTTTGTCGGAGACAGAGGCGGTCGATTTAGTGAAGGAT
genomic: TGCTGGACAACCAACTAAAATCACCTAGTCCACTATTACTCCCTGCAAGAgtaaggcact ... atgcatgcagGATGCCGTCACACCTTTGTCGGAGACAGAGGCGGTCGATTTAGTGAAGGAT
EST: gi|89166087|gb|CI103177.1|CI103177
EST:     CGCTGGACAACCAACTAAAATCACCTAGTCCACTATTACTCCCTGCAAGA                         GATGCCGTCACACCTTTGTCGGAGACAGAGGCGGTCGATTTAGTGAAGGAT
genomic: TGCTGGACAACCAACTAAAATCACCTAGTCCACTATTACTCCCTGCAAGAgtaaggcact ... atgcatgcagGATGCCGTCACACCTTTGTCGGAGACAGAGGCGGTCGATTTAGTGAAGGAT
EST: gi|86253685|gb|CI058412.1|CI058412
EST:     TGCTGGACAACCAACTAAAATCACCTAGTCCACTATTACTCCCTGCAAGA                         GATGCCGTCACACCTTTGTCGGAGACAGAGGCGGTCGATTTAGTGAAGGAT
genomic: TGCTGGACAACCAACTAAAATCACCTAGTCCACTATTACTCCCTGCAAGAgtaaggcact ... atgcatgcagGATGCCGTCACACCTTTGTCGGAGACAGAGGCGGTCGATTTAGTGAAGGAT
EST: gi|87013582|gb|CI267283.1|CI267283
EST:     TGCTGGACAACCAACTAAAATCACCTAGTCCACTATTACTCCCTGCAAGA                         GATGCCGTCACACCTTTGTCGGAGACAGAGGCGGTCGATTTAGTGAAGGAT
genomic: TGCTGGACAACCAACTAAAATCACCTAGTCCACTATTACTCCCTGCAAGAgtaaggcact ... atgcatgcagGATGCCGTCACACCTTTGTCGGAGACAGAGGCGGTCGATTTAGTGAAGGAT
EST: gi|88413219|gb|CI523780.1|CI523780
EST:     TAGTCCACTATTACTCCCTGCAAGA                         GATGCCGTCACACCTTTGTCGGAGACAGAGGCGGTCGATTTAGTGAAGGAT
genomic: TAGTCCACTATTACTCCCTGCAAGAgtaaggcact ... atgcatgcagGATGCCGTCACACCTTTGTCGGAGACAGAGGCGGTCGATTTAGTGAAGGAT
EST: gi|87034062|gb|CI187424.1|CI187424
EST:     TGCTGGACAACCAACTAAAATCACCTAGTCCACTATTACTCCCTGCAAGA                         GATGCCGTCACACCTTTGTCGGAGACAGAGGCGGTCGATTTAGTGAAGGAT
genomic: TGCTGGACAACCAACTAAAATCACCTAGTCCACTATTACTCCCTGCAAGAgtaaggcact ... atgcatgcagGATGCCGTCACACCTTTGTCGGAGACAGAGGCGGTCGATTTAGTGAAGGAT
EST: gi|88257652|gb|CI360238.1|CI360238
EST:     TGGTGGACAACCAACTAAAATCACCTAGTCCAGTATTACTCCCTGCAAGA                         GATGCCGTCACACCTTTGGTCGGAGACAGAGGCGGTCGATTTAGTGAAGGA
genomic: TGCTGGACAACCAACTAAAATCACCTAGTCCACTATTACTCCCTGCAAGAgtaaggcact ... atgcatgcagGATGCCGTCACACCTTT-GTCGGAGACAGAGGCGGTCGATTTAGTGAAGGA
EST: gi|88215696|gb|CI215545.1|CI215545
EST:     AAATCACCTAGTCCACTATTACTCCCTGCAAGA                         GATGCCGTCACACCTTTGTCGGAGACAGAGGCGGTCGATTTAGTGAAGGAT
genomic: AAATCACCTAGTCCACTATTACTCCCTGCAAGAgtaaggcact ... atgcatgcagGATGCCGTCACACCTTTGTCGGAGACAGAGGCGGTCGATTTAGTGAAGGAT
EST: gi|33818106|gb|CF334879.1|CF334879
EST:     GCTGGACAACCAAACTAAAATCACCTAGTCCACTATTACTCCCTGCAAGA                         GATGCCGTCACACCTTTGTCGGAGACAGAGGCGGTCGATTTAGTGAAGGAT
genomic: GCTGGACAACC-AACTAAAATCACCTAGTCCACTATTACTCCCTGCAAGAgtaaggcact ... atgcatgcagGATGCCGTCACACCTTTGTCGGAGACAGAGGCGGTCGATTTAGTGAAGGAT
EST: gi|88839225|gb|CI000697.1|CI000697
EST:     TGCTGGACAACCAACTAAAATCACCTAGTCCACTATTACTCCCTGCAAGA                         GATGCCGTCACACCTTTGTCGGAGACAGAGGCGGTCGATTTAGTGAAGGAT
genomic: TGCTGGACAACCAACTAAAATCACCTAGTCCACTATTACTCCCTGCAAGAgtaaggcact ... atgcatgcagGATGCCGTCACACCTTTGTCGGAGACAGAGGCGGTCGATTTAGTGAAGGAT
EST: gi|87035374|gb|CI189996.1|CI189996
EST:     TGCTGGACAACCAACTAAAATCACCTAGTCCACTATTACTCCCTGCAAGA                         GATGCCGTCACACCTTTGTCGGAGACAGAGGCGGTCGATTTAGTGAAGGAT
genomic: TGCTGGACAACCAACTAAAATCACCTAGTCCACTATTACTCCCTGCAAGAgtaaggcact ... atgcatgcagGATGCCGTCACACCTTTGTCGGAGACAGAGGCGGTCGATTTAGTGAAGGAT
EST: gi|33804938|gb|CF328346.1|CF328346
EST:     GCTGGACAACCCAACTAAAATCACCTAGTCCACTATTACTCCCTGCAAGA                         GATGCCGTCACACCTTTGTCGGAGACAGAGGCGGTCGATTTAGTGAAGGAT
genomic: GCTGGACAA-CCAACTAAAATCACCTAGTCCACTATTACTCCCTGCAAGAgtaaggcact ... atgcatgcagGATGCCGTCACACCTTTGTCGGAGACAGAGGCGGTCGATTTAGTGAAGGAT
EST: gi|86502309|gb|CI144942.1|CI144942
EST:     TGCTGGACAACCAACTAAAATCACCTAGTCCACTATTACTCCCTGCAAGA                         GATGCCGTCACACCTTTGTCGGAGACAGAGGCGGTCGATTTAGTGAAGGAT
genomic: TGCTGGACAACCAACTAAAATCACCTAGTCCACTATTACTCCCTGCAAGAgtaaggcact ... atgcatgcagGATGCCGTCACACCTTTGTCGGAGACAGAGGCGGTCGATTTAGTGAAGGAT
EST: gi|88450183|gb|CI541944.1|CI541944
EST:     ACAACCAACTAAAATCACCTAGTCCACTATTACTCCCTGCAAGA                         GATGCCGTCACACCTTTGTCGGAGACAGAGGCGGTCGATTTAGTGAAGGAT
genomic: ACAACCAACTAAAATCACCTAGTCCACTATTACTCCCTGCAAGAgtaaggcact ... atgcatgcagGATGCCGTCACACCTTTGTCGGAGACAGAGGCGGTCGATTTAGTGAAGGAT
EST: gi|86527148|gb|CI167354.1|CI167354
EST:     TGCTGGACAACCAACTAAAATCACCTAGTCCACTATTACTCCCTGCAAGA                         GATGCCGTCACACCTTTGTCGGAGACAGAGGCGGTCGATTTAGTGAAGGAT
genomic: TGCTGGACAACCAACTAAAATCACCTAGTCCACTATTACTCCCTGCAAGAgtaaggcact ... atgcatgcagGATGCCGTCACACCTTTGTCGGAGACAGAGGCGGTCGATTTAGTGAAGGAT
EST: gi|86253702|gb|CI058429.1|CI058429
EST:     TGCTGGACAACCAACTAAAATCACCTAGTCCACTATTACTCCCTGCAAGA                         GATGCCGTCACACCTTTGTCGGAGACAGAGGCGGTCGATTTAGTGAAGGAT
genomic: TGCTGGACAACCAACTAAAATCACCTAGTCCACTATTACTCCCTGCAAGAgtaaggcact ... atgcatgcagGATGCCGTCACACCTTTGTCGGAGACAGAGGCGGTCGATTTAGTGAAGGAT
EST: gi|33683522|gb|CF311761.1|CF311761
EST:     GCTGGACAACCAAACTAAAATCACCTAGTCCACTATTACTCCCTGCAAGA                         GATGCCGTCACACCTTTGTCGGAGACAGAGGCGGTCGATTTAGTGAAGGAT
genomic: GCTGGACAACC-AACTAAAATCACCTAGTCCACTATTACTCCCTGCAAGAgtaaggcact ... atgcatgcagGATGCCGTCACACCTTTGTCGGAGACAGAGGCGGTCGATTTAGTGAAGGAT
EST: gi|33818151|gb|CF334904.1|CF334904
EST:     TGCTGGACAACCAACTAAAATCACCTAGTCCACTATTACTCCCTGCAAGA                         GATGCCGTCACACCTTTGTCGG
genomic: TGCTGGACAACCAACTAAAATCACCTAGTCCACTATTACTCCCTGCAAGAgtaaggcact ... atgcatgcagGATGCCGTCACACCTTTGTCGG
EST: gi|88728176|gb|CI751686.1|CI751686
EST:     TGCTGGACAACCAACTAAAATCACCTAGTCCACTATTACTCCCTGCAAGA                         GATGCCGTCACACCTTTGTCGGAGACAGAGGCGGTCGATTTAGTGAAGGAT
genomic: TGCTGGACAACCAACTAAAATCACCTAGTCCACTATTACTCCCTGCAAGAgtaaggcact ... atgcatgcagGATGCCGTCACACCTTTGTCGGAGACAGAGGCGGTCGATTTAGTGAAGGAT

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 75 (upstream exon), 75 (downstream exon)
Score: 95

GAGGACTGGCTACAGTGCACAGGGAACAGGATCTGCTTTGATCATGCCAGTGCTGGACAACCAACTAAAATCACCTAGTCCACTATTACTCCCTGCAAGAgtaaggcact ... atgcatgcagGATGCCGTCACACCTTTGTCGGAGACAGAGGCGGTCGATTTAGTGAAGGATGTGTTTGCATCGGCAACTGAGAGGGACATCTACACT




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Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GAGGACTGGCTACAGTGCACAGGGAACAGGATCTGCTTTGATCATGCCAGTGCTGGACAACCAACTAAAATCACCTAGTCCACTATTACTCCCTGCAAGAgtaaggcactgaagttttactagtttgttacctggcatgtgcattatgattgatcatgtcatgtgatcatctggttgatttgacatgcaagtttatgtgccacccagaaataagtgctcaactgctgatttgaatagctccactagtcctaagaatatttctgatgcatgcag

- - - - - - - - - - - - - - - - - - - - - - - - -  GCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA