1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
CCTCGTCTGGTAGCACCAACCTGTTTGTATTTGGCATCAAAGGTGGAAGAGAGCACAGTGCAAGCAAGACTTCTTGTCTTTTACATAAAAAAGATGTGTGgtaaggctcataatcataaatggacacatatttatcgggaagaactgcactaacctaaaactaaacatgtgctctccccccgcaaaatgtag
species | Oryza sativa |
transcript | LOC_Os09g32680.1 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: GAGCACAGTGCAAGCAAGACTTCTTGTCTTTTACATAAAAAAGATGTGTG CTTCTGATGAGAAGTACCGGTTTGAAATCAAGGATATCCTTGAAATGGAAAEST: gi|38568817|gb|CD671032.1|CD671032
genomic: GAGCACAGTGCAAGCAAGACTTCTTGTCTTTTACATAAAAAAGATGTGTGgtaaggctca ... caaaatgtagCTTCTGATGAGAAGTACCGGTTTGAAATCAAGGATATCCTTGAAATGGAAA
EST: GAGCACAGTGCAAGCAAGACTTCTTGTCTTTTACATAAAAAAGATGTGTG CTTCTGATGAGAAGTACCGGTTTGAAATCAAGGATATCCTTGAAATGGAAAEST: gi|58688702|gb|CK077389.1|CK077389
genomic: GAGCACAGTGCAAGCAAGACTTCTTGTCTTTTACATAAAAAAGATGTGTGgtaaggctca ... caaaatgtagCTTCTGATGAGAAGTACCGGTTTGAAATCAAGGATATCCTTGAAATGGAAA
EST: GAGCACAGTGCAAGCAAGACTTCTTGTCTTTTACATAAAAAAGATGTGTG CTTCTGATGAGAAGTACCGGTTTGAAATCAAGGATATCCTTGAAATGGAAAEST: gi|29660228|gb|CB656503.1|CB656503
genomic: GAGCACAGTGCAAGCAAGACTTCTTGTCTTTTACATAAAAAAGATGTGTGgtaaggctca ... caaaatgtagCTTCTGATGAGAAGTACCGGTTTGAAATCAAGGATATCCTTGAAATGGAAA
EST: TTTACATAAAAAAGATGTGTG CTTCTGATGAGAAGTACCGGTTTGAAATCAAGGATATCCTTGAAATGGAAAEST: gi|58598688|gb|CK009216.1|CK009216
genomic: TTTACATAAAAAAGATGTGTGgtaaggctca ... caaaatgtagCTTCTGATGAGAAGTACCGGTTTGAAATCAAGGATATCCTTGAAATGGAAA
EST: GAGCACAGTGCAAGCAAGACTTCTTGTCTTTTACATAAAAAAGATGTGTG CTTCTGATGAGAAGTACCGGTTTGAAATCAAGGATATCCTTGAAATGGAAAEST: gi|29660227|gb|CB656502.1|CB656502
genomic: GAGCACAGTGCAAGCAAGACTTCTTGTCTTTTACATAAAAAAGATGTGTGgtaaggctca ... caaaatgtagCTTCTGATGAGAAGTACCGGTTTGAAATCAAGGATATCCTTGAAATGGAAA
EST: GAGCACAGTGCAAGCAAGACTTCTTGTCTTTTACATAAAAAAGATGTGTG CTTCTGATGAGAAGTACCGGTTTGAAATCAAGGATATCCTTGAAATGGAAAEST: gi|218483409|gb|FG950971.1|FG950971
genomic: GAGCACAGTGCAAGCAAGACTTCTTGTCTTTTACATAAAAAAGATGTGTGgtaaggctca ... caaaatgtagCTTCTGATGAGAAGTACCGGTTTGAAATCAAGGATATCCTTGAAATGGAAA
EST: GAGCACAGTGCAAGCAAGACTTCTTGTCTTTTACATAAAAAAGATGTGTG CTTCTGATGAGAAGTACCGGTTTGAAATCAAGGATATCCTTGAAATGGAAAEST: gi|218503593|gb|FG957186.1|FG957186
genomic: GAGCACAGTGCAAGCAAGACTTCTTGTCTTTTACATAAAAAAGATGTGTGgtaaggctca ... caaaatgtagCTTCTGATGAGAAGTACCGGTTTGAAATCAAGGATATCCTTGAAATGGAAA
EST: GAGCACAGTGCAAGCAAGACTTCTTGTCTTTTACATAAAAAAGATGTGTG CTTCTGATGAGAAGTACCGGTTTGAAATCAAGGATATCCTTGAAATGGAAAEST: gi|58592302|gb|CF990610.1|CF990610
genomic: GAGCACAGTGCAAGCAAGACTTCTTGTCTTTTACATAAAAAAGATGTGTGgtaaggctca ... caaaatgtagCTTCTGATGAGAAGTACCGGTTTGAAATCAAGGATATCCTTGAAATGGAAA
EST: AGCACAGTGCAAGCAAGACTTCTTGTCTTTTACATAAAAAACGATGTGTG CTTCTGATGAGAAGTACCGGTTTGAAATCAAGGATATCCEST: gi|27547661|gb|CA765583.2|CA765583
genomic: AGCACAGTGCAAGCAAGACTTCTTGTCTTTTACATAAAAAA-GATGTGTGgtaaggctca ... caaaatgtagCTTCTGATGAGAAGTACCGGTTTGAAATCAAGGATATCC
EST: GAGCACAGTGCAAGCAAGACTTCTTGTCTTTTACATAAAAAAGATGTGTG CTTCTGATGAGAAGTACCGGTTTGAAATCAAGGATATCCTTGAAATGGAAA
genomic: GAGCACAGTGCAAGCAAGACTTCTTGTCTTTTACATAAAAAAGATGTGTGgtaaggctca ... caaaatgtagCTTCTGATGAGAAGTACCGGTTTGAAATCAAGGATATCCTTGAAATGGAAA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CCTCGTCTGGTAGCACCAACCTGTTTGTATTTGGCATCAAAGGTGGAAGAGAGCACAGTGCAAGCAAGACTTCTTGTCTTTTACATAAAAAAGATGTGTGgtaaggctcataatcataaatggacacatatttatcgggaagaactgcactaacctaaaactaaacatgtgctctccccccgcaaaatgtag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG