1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
AAGCTTACTTATATGATGGTTACTGGGAAGATATTGGTACTATAGAGGCATTCTACAATGCCAACTTGGGGATAACCAAGAAACCTGTGCCAGATTTTAGgtaaggtttacattttgcatggtgaaaacaagttacttttaaaagggtgcatttctgctgaattttcttcctatttttgagcaaacattattgtgtgcag
species | Oryza sativa |
transcript | LOC_Os09g12660.1 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: TTCTACAATGCCAACTTGGGGATAACCAAGAAACCTGTGCCAGATTTTAG CTTCTATGACCGTTCTGCCGCAATTTATACGCAACNTCGATACTTGCCTCCEST: gi|30228286|gb|CB966177.1|CB966177
genomic: TTCTACAATGCCAACTTGGGGATAACCAAGAAACCTGTGCCAGATTTTAGgtaaggttta ... ttgtgtgcagCTTCTATGACCGTTCTGCCGCAATTTATACGCAACCTCGATACTTGCCTCC
EST: TCTACAATGCCAACTGGGGGATAACCAAAGAAACCTGTGCCAGATTTTAG CTTCTATGACCGTTCTGCCGCAATTTATACGCAACCTCGATACTGGCCTCCEST: gi|24468914|gb|CA305863.1|CA305863
genomic: TCTACAATGCCAACTTGGGGATAACC-AAGAAACCTGTGCCAGATTTTAGgtaaggttta ... ttgtgtgcagCTTCTATGACCGTTCTGCCGCAATTTATACGCAACCTCGATACTTGCCTCC
EST: TTCTACAATGCCAACTTGGGGATAACCAAGAAACCTGTGCCAGATTTTAG CTTCTATGACCGTTCTGCCGCAATTTATACGCAACCTCGATACTTGCCTCCEST: gi|86517463|gb|CI157669.1|CI157669
genomic: TTCTACAATGCCAACTTGGGGATAACCAAGAAACCTGTGCCAGATTTTAGgtaaggttta ... ttgtgtgcagCTTCTATGACCGTTCTGCCGCAATTTATACGCAACCTCGATACTTGCCTCC
EST: TTCTACAATGCCAACTTGGGGATAACCAAGAAACCTGTGCCAGATTTTAG CTTCTATGACCGTTCTGCCGCAATTTATACGCAACCTCGATACTTGCCTCCEST: gi|86504994|gb|CI147627.1|CI147627
genomic: TTCTACAATGCCAACTTGGGGATAACCAAGAAACCTGTGCCAGATTTTAGgtaaggttta ... ttgtgtgcagCTTCTATGACCGTTCTGCCGCAATTTATACGCAACCTCGATACTTGCCTCC
EST: TTCTACAATGCCAACTTGGGGATAACCAAGAAACCTGTGCCAGATTTTAG CTTCTATGACCGTTCTGCCGCAATTTATACGCAACCTCGATACTTGCCTCCEST: gi|58683758|gb|CK072445.1|CK072445
genomic: TTCTACAATGCCAACTTGGGGATAACCAAGAAACCTGTGCCAGATTTTAGgtaaggttta ... ttgtgtgcagCTTCTATGACCGTTCTGCCGCAATTTATACGCAACCTCGATACTTGCCTCC
EST: AACTTGGGGATAACCAAGAAACCTGTGCCAGATTTTAG CTTCTATGACCGTTCTGCCGCAATTTATACGCAACCTCGATACTTGCCTCCEST: gi|86858990|gb|CI275175.1|CI275175
genomic: AACTTGGGGATAACCAAGAAACCTGTGCCAGATTTTAGgtaaggttta ... ttgtgtgcagCTTCTATGACCGTTCTGCCGCAATTTATACGCAACCTCGATACTTGCCTCC
EST: TTCTACAATGCCAACTTGGGGATAACCAAGAAACCTGTGCCAGATTTTAG CTTCTATGACCGTTCTGCCGCAATTTATACGCAACCTCGATACTTGCCTCCEST: gi|88232188|gb|CI230646.1|CI230646
genomic: TTCTACAATGCCAACTTGGGGATAACCAAGAAACCTGTGCCAGATTTTAGgtaaggttta ... ttgtgtgcagCTTCTATGACCGTTCTGCCGCAATTTATACGCAACCTCGATACTTGCCTCC
EST: TTCTACAATGCCAACTTGGGGATAACCAAGAAACCTGTGCCAGATTTTAG CTTCTATGACCGTTCTGCCGCAATTTATACGCAACCTCGATACTTGCCTCCEST: gi|218485015|gb|FG946141.1|FG946141
genomic: TTCTACAATGCCAACTTGGGGATAACCAAGAAACCTGTGCCAGATTTTAGgtaaggttta ... ttgtgtgcagCTTCTATGACCGTTCTGCCGCAATTTATACGCAACCTCGATACTTGCCTCC
EST: ACCTGTGCCAGATTTTAG CTTCTATGACCGTTCTGCCGCAATTTATACGCAACCTCGATACTTGCCTCCEST: gi|29675781|gb|CB672056.1|CB672056
genomic: ACCTGTGCCAGATTTTAGgtaaggttta ... ttgtgtgcagCTTCTATGACCGTTCTGCCGCAATTTATACGCAACCTCGATACTTGCCTCC
EST: TTCTACAATGCCAACTTGGGGATAACCAAGAAACCTGTGCCAGATTTTAG CTTCTATGACCGTTCTGCCGCAATTTATACGCAACCTCGATACTTGCCTCCEST: gi|86520775|gb|CI160981.1|CI160981
genomic: TTCTACAATGCCAACTTGGGGATAACCAAGAAACCTGTGCCAGATTTTAGgtaaggttta ... ttgtgtgcagCTTCTATGACCGTTCTGCCGCAATTTATACGCAACCTCGATACTTGCCTCC
EST: TTCTACAATGCCAACTTGGGGATAACCAAGAAACCTGTGCCAGATTTTAG CTTCTATGACCGTTCTGCCGCAATTTATACGCAACCTCGATACTTGCCTCCEST: gi|58674587|gb|CK063274.1|CK063274
genomic: TTCTACAATGCCAACTTGGGGATAACCAAGAAACCTGTGCCAGATTTTAGgtaaggttta ... ttgtgtgcagCTTCTATGACCGTTCTGCCGCAATTTATACGCAACCTCGATACTTGCCTCC
EST: TTCTACAATGCCAACTTGGGGATAACCGAGAAACCTGTGCCAGATTTTAG CTGCTATGACCGTTCTGCCGCAATTTATACG
genomic: TTCTACAATGCCAACTTGGGGATAACCAAGAAACCTGTGCCAGATTTTAGgtaaggttta ... ttgtgtgcagCTTCTATGACCGTTCTGCCGCAATTTATACG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AAGCTTACTTATATGATGGTTACTGGGAAGATATTGGTACTATAGAGGCATTCTACAATGCCAACTTGGGGATAACCAAGAAACCTGTGCCAGATTTTAGgtaaggtttacattttgcatggtgaaaacaagttacttttaaaagggtgcatttctgctgaattttcttcctatttttgagcaaacattattgtgtgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA