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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGATCCTTTGAATGAGAAATTTGATCCTAGTAGACATTGTGCAATCTTTCAAATTCCTGACCCCTCGAAACCTTCAGGAACTGTAGCTTCTGTTGTAAAGgtatggaatcgtgcattttctgatatccatgtttctgcatattgtggggaacctaagcatcttgtggttaagcgttaatcatgatctatgattgtattct...

Basic information

species Oryza sativa
transcript LOC_Os09g11250.1
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os09g11250.1 (Oryza sativa), 5'ss of exon 5
lower sequence: GRMZM2G030312_T01 (Zea mays), 5'ss of exon 5
TGATCCTTTGAATGAGAAATTTGATCCTAGTAGACATTGTGCAATCTTTCAAATTCCTGACCCCTCGAAACCTTCAGGAACTGTAGCTTCTGTTGTAAAGgtatggaatcgtgcattttctgatatccatgtttctgcatattgtggggaacctaagcatcttgtggttaagcgttaatcatgatctatg--attgtattct----
||| ||  |||||||| ||||||||||||  || ||||||||| | |||||||||||||| || || |||||  | || || || ||||||||||||||||||||  | | |  |    |      |  | |||| ||||||| | || || | ||| || || | | |  | ||||       ||  |   ||||| || |    
TGACCCGCTGAATGAGGAATTTGATCCTAACAGGCATTGTGCAGTTTTTCAAATTCCTGATCCTTCAAAACCACCGGGGACCGTTGCTTCTGTTGTAAAGgtatgttaacttaaaaacac-----cctttttttcagcatattataggaaatccaagaatgtt-tagattggagttatcgggtttccgttgcattgtgtttttttc
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|88204706|gb|CI204555.1|CI204555
EST:     AAATTCCTGACCCCTCGAAACCTTCAGGAACTGTAGCTTCTGTTGTAAAG                         GTGGGCTACATGCTACATGACCGTGTTCTGCGCCCTGCAGAAGTCGGTGTT
genomic: AAATTCCTGACCCCTCGAAACCTTCAGGAACTGTAGCTTCTGTTGTAAAGgtatggaatc ... gtgatttcagGTGGGCTACATGCTACATGACCGTGTTCTGCGCCCTGCAGAAGTCGGTGTT
EST: gi|25806684|gb|CA762645.1|CA762645
EST:     AAATTCCTGACCCCTTGAAACCTTCAGGAACTGTAGCTTCTGTTGTAAAG                         GTGGGCTACATGCTACATGACCGTGTTTTGCGCCCTGCAGAAGTCGGTGTT
genomic: AAATTCCTGACCCCTCGAAACCTTCAGGAACTGTAGCTTCTGTTGTAAAGgtatggaatc ... gtgatttcagGTGGGCTACATGCTACATGACCGTGTTCTGCGCCCTGCAGAAGTCGGTGTT