1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
TGTTTGCAGCACAGTCAATTCTATTGGGCATCAATGATATTGTTGTAGCCGGTGGCATGGAAAGCATGTCTAATGCTCCAAAATACATTGCTGAAGCTAGgtctgcaaagtgttcttttggttgtacatcctgatacagcgcacaataaaagtacaacagaaatttaattggcaaacaatagtatgcgaggaaaagtgta...
species | Oryza sativa |
transcript | LOC_Os09g07830.3 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: GGTGGCATGGAAAGCATGTCTAATGCTCCAAAATACATTGCTGAAGCTAG AAAAGGATCTCGTTTTGGACATGACACTCTTGTTGATGGCATGCTTAAAGAEST: gi|29640957|gb|CB645964.1|CB645964
genomic: GGTGGCATGGAAAGCATGTCTAATGCTCCAAAATACATTGCTGAAGCTAGgtctgcaaag ... atgtttgcagAAAAGGATCTCGTTTTGGACATGACACTCTTGTTGATGGCATGCTTAAAGA
EST: GGTGGCATGGAAAGCATGTCTAATGCTCCAAAATACATTGCTGAAGCTAG AAAAGGATCTCGTTTTGGACATGACACTCTTGTTGATGGCATGCTTAAAGAEST: gi|33678061|gb|CF306300.1|CF306300
genomic: GGTGGCATGGAAAGCATGTCTAATGCTCCAAAATACATTGCTGAAGCTAGgtctgcaaag ... atgtttgcagAAAAGGATCTCGTTTTGGACATGACACTCTTGTTGATGGCATGCTTAAAGA
EST: GGTGGCATGGAAAGCATGTCTAATGCTCCAAAA-ACATTGCTGAAGCTAG AAAAGGATCTCGTTTTGGACATGACACTCTTGTTGATGGCATGCTTAAAGAEST: gi|58683479|gb|CK072166.1|CK072166
genomic: GGTGGCATGGAAAGCATGTCTAATGCTCCAAAATACATTGCTGAAGCTAGgtctgcaaag ... atgtttgcagAAAAGGATCTCGTTTTGGACATGACACTCTTGTTGATGGCATGCTTAAAGA
EST: GGTGGCATGGAAAGCATGTCTAATGCTCCAAA-TACATTGCTGN-GCTAG AAAAGGATCTCGTTTT
genomic: GGTGGCATGGAAAGCATGTCTAATGCTCCAAAATACATTGCTGAAGCTAGgtctgcaaag ... atgtttgcagAAAAGGATCTCGTTTT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TGTTTGCAGCACAGTCAATTCTATTGGGCATCAATGATATTGTTGTAGCCGGTGGCATGGAAAGCATGTCTAATGCTCCAAAATACATTGCTGAAGCTAGgtctgcaaagtgttcttttggttgtacatcctgatacagcgcacaataaaagtacaacagaaatttaattggcaaacaatagtatgcgaggaaaagtgta
- - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC