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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GACAAATCATGGCGAGTTCGTTATATGGTTGCCAATCAATTGTATGAGCTCTGCGAGGCAGTTGGTCCTGAACATTCTAGgtattatgcgccttatgtcctaaatcttttctgtcaaaaccaatcataaatactttggtccttaaatggtgcaagttattatttatttcttatctaaatacataattttgtaatctgattccaatattcatctatggtatgttcatgtgtttggtaatag

Basic information

species Oryza sativa
transcript LOC_Os09g07510.1
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os09g07510.1 (Oryza sativa), 5'ss of exon 5
lower sequence: GLYMA10G42250.1 (Glycine max), 5'ss of exon 5
GACAAATCATGGCGAGTTCGTTATATGGTTGCCAATCAATTGTATGAGCTCTGCGAGGCAGTTGGTCCTGAACATTCTAGgtattatgcgccttatgtcctaaatcttttctgtcaaaaccaatcataaatactttggtccttaaatggtgcaagttattatttatttcttatctaaatacataattttgtaatctgattccaatattcatctatggtatgttcatgtgtttggtaatag
|| || || ||||| || ||||| |||||||| ||||||||||||||||| || || || || || ||||||| | | |||||||||     |||| |  ||   || || | |        ||   | || ||      |||      |  | | || |     | | || | | |||| ||  | ||                                                   
GATAAGTCTTGGCGCGTGCGTTACATGGTTGCAAATCAATTGTATGAGCTTTGTGAAGCTGTAGGCCCTGAACCTACCAGgtattattattattat-tattactactattattttgctgattattgcacatgctgcatatctt------tctatgatagtgc---tatgttgtgtgaatatattgtatta--------------------------------------------------

upper sequence: LOC_Os09g07510.1 (Oryza sativa), 5'ss of exon 5
lower sequence: GLYMA20G24790.1 (Glycine max), 5'ss of exon 5
GACAAATCATGGCGAGTTCGTTATATGGTTGCCAATCAATTGTATGAGCTCTGCGAGGCAGTTGGTCCTGAACATTCTAGgtattatgcgccttatgtcctaaatcttttctgtcaaaaccaatcataaatactttggtccttaaatggtgcaagttattatttatttcttatctaaatacataattttgtaatctgattccaatattcatctatggtatgttcatgtgtttggtaatag
|| || || ||||| || ||||| |||||||| ||||||||||||||||| ||||| || || || ||||||| | | |||||||||                ||  ||  | | |      || || | || |||| |  |||  | |  || | |   || | ||||| |||  | | |    || ||| |    |||  |                                     
GATAAGTCTTGGCGTGTGCGTTACATGGTTGCAAATCAATTGTATGAGCTTTGCGAAGCTGTAGGCCCTGAACCTACCAGgtattatt---------------attattattatta----ttattattattattttgctgatta--ttgcacatgctgc-atatctttct-atcatagtgctatgttatgtgaatatattgta-------------------------------------

upper sequence: LOC_Os09g07510.1 (Oryza sativa), 5'ss of exon 5
lower sequence: GLYMA07G10000.1 (Glycine max), 5'ss of exon 4
GACAAATCATGGCGAGTTCGTTATATGGTTGCCAATCAATTGTATGAGCTCTGCGAGGCAGTTGGTCCTGAACATTCTAGgtattatgcgccttatgtcctaaatcttttctgtcaaaaccaatcataaatactttggtccttaaatggtgcaagttattatttatt--tcttatctaaatacataattttgtaatctgattccaatattcatctatggtatgttcatgtgtttggtaatag
|| || |||||||| |||||||| |||||||| |||||| | |||||||| || || || ||||||||||| |   | |||||       |||| ||| |          |||  ||||       | | |  || | |    | ||  |   || | || |  |||  |  ||||| || |  |  |||  |    | ||   |||                                   
GATAAGTCATGGCGTGTTCGTTACATGGTTGCTAATCAACTATATGAGCTATGTGAAGCTGTTGGTCCTGACCCCACCAGgta------accttttgtac----------ctgctaaaa-------tgattggttggttgtcaagattttctgagcttttttccattggtgctatctgaaaatctgttttcat----taatattaat-----------------------------------

upper sequence: LOC_Os09g07510.1 (Oryza sativa), 5'ss of exon 5
lower sequence: GLYMA09G31760.1 (Glycine max), 5'ss of exon 5
GACAAATCATGGCGAGTTCGTTATATGGTTGCCAATCAATTGTATGAGCTCTGCGAGGCAGTTGGTCCTGAACATTCTAGgtattatgcgccttatgtcctaaatcttt--tctgtcaaaaccaatcataaatactttggtccttaaatggtgcaagttattatttatttcttatctaaatacataattttgtaatctgattccaatattcatctatggtatgttcatgtgtttggtaatag
|| || |||||||| |||||||| |||||||| |||||| | |||||||| || || || ||||||||||| |   | |||||  |       ||  | |||||   ||  |  ||       | |     | |   |  |  |  | |||||| |  |   | |   || ||||  | |                                                              
GATAAGTCATGGCGTGTTCGTTACATGGTTGCTAATCAACTATATGAGCTATGTGAAGCTGTTGGTCCTGACCCCACCAGgtaaaaccttttgtacctgctaaacgattgattggttgttgtgattttctgacaagctttttttccattggtgctatctgaaaatctgtttttattaata--------------------------------------------------------------

upper sequence: LOC_Os09g07510.1 (Oryza sativa), 5'ss of exon 5
lower sequence: Vv17s0000g03870.t01 (Vitis vinifera), 5'ss of exon 6
GACAAATCATGGCGAGTTCGTTATATGGTTGCCAATCAATTGTATGAGCTCTGCGAGGCAGTTGGTCCTGAACATTCTAGgtat-tatgcgccttatgtcctaaatcttttctgtca---aaaccaatcataaa----tactttggtccttaaatggtgcaagttattatttatttcttatctaaatacataattttgtaatctgattccaatattcatctatggtatgttcatgtgtttggtaatag
|| || || ||||| ||||| ||||||||||| |||||||| |||||||| || || || ||||||||||| | | | |||||  ||| | |||  ||     || ||  | |||     |   |  ||||  |     | ||   |  ||||||  ||  || | | || | ||||||                                                                     
GATAAGTCTTGGCGTGTTCGCTATATGGTTGCAAATCAATTATATGAGCTATGTGAAGCTGTTGGTCCTGAGCCTACCAGgtaaatattcccctgttgatgataagctactgtgttttgcatttctttcatgtaaccccaattctattgttaaatcctgtgagct-taatatttttcttga-------------------------------------------------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|300215963|gb|HO088589.1|HO088589
EST:     GCCAATCAATTGTATGAGCTCTGCGAGGCAGTTGGTCCTGAACATTCTAG                         GGAGCAGTTGGTGCCGGCATATGTTCGTCTCCTTCGTGACAATGAGGCTGA
genomic: GCCAATCAATTGTATGAGCTCTGCGAGGCAGTTGGTCCTGAACATTCTAGgtattatgcg ... ttggtaatagGGAGCAGTTGGTGCCGGCATATGTTCGTCTCCTTCGTGACAATGAGGCGGA
EST: gi|58654414|gb|CK043094.1|CK043094
EST:     GCCAATCAATTGTATGAGCTCTGCGAGGCAGTTGGTCCTGAACATTCTAG                         GGAGCAGTTGGTGCCGGCATATGTTCGTCTCCTTCGTGACAATGAGGCGGA
genomic: GCCAATCAATTGTATGAGCTCTGCGAGGCAGTTGGTCCTGAACATTCTAGgtattatgcg ... ttggtaatagGGAGCAGTTGGTGCCGGCATATGTTCGTCTCCTTCGTGACAATGAGGCGGA
EST: gi|86904336|gb|CI306754.1|CI306754
EST:     CAATTGTATGAGCTCTGCGAGGCAGTTGGTCCTGAACATTCTAG                         GGAGCAGTTGGTGCCGGCATATGTTCGTCTCCTTCGTGACAATGAGGCGGA
genomic: CAATTGTATGAGCTCTGCGAGGCAGTTGGTCCTGAACATTCTAGgtattatgcg ... ttggtaatagGGAGCAGTTGGTGCCGGCATATGTTCGTCTCCTTCGTGACAATGAGGCGGA
EST: gi|58652709|gb|CK041389.1|CK041389
EST:     GCCAATCAATTGTATGAGCTCTGCGAGGCAGTTGGTCCTGAACATTCTAG                         GGAGCAGTTGGTGCCGGCATATGTTCGTCTCCTTCGTGACAATGAGGCGGA
genomic: GCCAATCAATTGTATGAGCTCTGCGAGGCAGTTGGTCCTGAACATTCTAGgtattatgcg ... ttggtaatagGGAGCAGTTGGTGCCGGCATATGTTCGTCTCCTTCGTGACAATGAGGCGGA
EST: gi|38474762|gb|CF958895.1|CF958895
EST:     GCCAATCAATTGTATGAGCTCTGCGAGGCAGTTGGTCCTGAACATTCTAG                         GGAGCAGTTGGTGCCGGCATATGTTCGTCTCCTTCGTGACAATGAGGCGGA
genomic: GCCAATCAATTGTATGAGCTCTGCGAGGCAGTTGGTCCTGAACATTCTAGgtattatgcg ... ttggtaatagGGAGCAGTTGGTGCCGGCATATGTTCGTCTCCTTCGTGACAATGAGGCGGA
EST: gi|33654809|gb|CF277423.1|CF277423
EST:     GCCAATCAATTGTATGAGCTCTGCGAGGCAGTTGGTCCTGAACATTCTAG                         GGAGCAGTTGGTGCCGGCATATGTTCGTCTCCTTCGTGACAATGAGGCGGA
genomic: GCCAATCAATTGTATGAGCTCTGCGAGGCAGTTGGTCCTGAACATTCTAGgtattatgcg ... ttggtaatagGGAGCAGTTGGTGCCGGCATATGTTCGTCTCCTTCGTGACAATGAGGCGGA
EST: gi|58593044|gb|CF991352.1|CF991352
EST:     GCCAATCAATTGTATGAGCTCTGCGAGGCAGTTGGTCCTGAACATTCTAG                         GGAGCAGTTGGTGCCGGCATATGTTCGTCTCCTTCGTGACAATGAGGCTGA
genomic: GCCAATCAATTGTATGAGCTCTGCGAGGCAGTTGGTCCTGAACATTCTAGgtattatgcg ... ttggtaatagGGAGCAGTTGGTGCCGGCATATGTTCGTCTCCTTCGTGACAATGAGGCGGA
EST: gi|33796143|gb|CF323937.1|CF323937
EST:     GCCAATCAATTGTATGAGCTCTGCGAGGCAGTTGGTCCTGAACATTCTAG                         GGAGCAGTTGGTGCCGGCATATGTTCGTCTCCTTCGTGACAATGAGGCGGA
genomic: GCCAATCAATTGTATGAGCTCTGCGAGGCAGTTGGTCCTGAACATTCTAGgtattatgcg ... ttggtaatagGGAGCAGTTGGTGCCGGCATATGTTCGTCTCCTTCGTGACAATGAGGCGGA
EST: gi|29635602|gb|CB640611.1|CB640611
EST:     GGCAGTTGGTCCTGAACATTCTAG                         GGAGCAGTTGGTGCCGGCATATGTTCGTCTCCTTCGTGACAATGAGGCGGA
genomic: GGCAGTTGGTCCTGAACATTCTAGgtattatgcg ... ttggtaatagGGAGCAGTTGGTGCCGGCATATGTTCGTCTCCTTCGTGACAATGAGGCGGA
EST: gi|58598714|gb|CK009242.1|CK009242
EST:     GCCAATCAATTGTATGAGCTCTGCGAGGCAGTTGGTCCTGAACATTCTAG                         GGAGCAGTTGGTGCCGGCATATGTTCGTCTCCTTCGTGACAATGAGGCGGA
genomic: GCCAATCAATTGTATGAGCTCTGCGAGGCAGTTGGTCCTGAACATTCTAGgtattatgcg ... ttggtaatagGGAGCAGTTGGTGCCGGCATATGTTCGTCTCCTTCGTGACAATGAGGCGGA
EST: gi|218487576|gb|FG960599.1|FG960599
EST:     GAGCTCTGCGAGGCAGGTTGGTCCTGAACATTCTAG                         GGAGCAGTTGGTGCCGGCATATGTTCGTCTCCTTCGTGACAATGAGGCGGA
genomic: GAGCTCTGCGAGGCA-GTTGGTCCTGAACATTCTAGgtattatgcg ... ttggtaatagGGAGCAGTTGGTGCCGGCATATGTTCGTCTCCTTCGTGACAATGAGGCGGA
EST: gi|300215769|gb|HO088395.1|HO088395
EST:     GCCAATCAATTGTATGAGCTCTGCGAGGCAGTTGGTCCTGAACATTCTAG                         GGAGCAGTTGGTGCCGGCATATGTTCGTCTCCTTCGTGACAATGAGGCTGA
genomic: GCCAATCAATTGTATGAGCTCTGCGAGGCAGTTGGTCCTGAACATTCTAGgtattatgcg ... ttggtaatagGGAGCAGTTGGTGCCGGCATATGTTCGTCTCCTTCGTGACAATGAGGCGGA
EST: gi|3768380|gb|AU032407.1|AU032407
EST:     GGTCCTGAACATTCTAG                         GGAGCAGTTGGTGCCGGCATATGTTCGTCTCCTTCGTGACAATGAGGCGGA
genomic: GGTCCTGAACATTCTAGgtattatgcg ... ttggtaatagGGAGCAGTTGGTGCCGGCATATGTTCGTCTCCTTCGTGACAATGAGGCGGA
EST: gi|58655438|gb|CK044118.1|CK044118
EST:     GCCAATCAATTGTATGAGCTCTGCGAGGCAGTTGGTCCTGAACATTCTAG                         GGAGCAGTTGGTGCCGGCATATGTTCGTCTCCTTCGTGACAATGAGGCGGA
genomic: GCCAATCAATTGTATGAGCTCTGCGAGGCAGTTGGTCCTGAACATTCTAGgtattatgcg ... ttggtaatagGGAGCAGTTGGTGCCGGCATATGTTCGTCTCCTTCGTGACAATGAGGCGGA
EST: gi|33676187|gb|CF304426.1|CF304426
EST:     GCCAATCAATTGTATGAGCTCTGCGAGGCAGTTGGTCCTGAACATTCTAG                         GGAGCAGTTGGTGCCGGCATATGTTCGTCTCCTTCGTGACAATGAGGCGGA
genomic: GCCAATCAATTGTATGAGCTCTGCGAGGCAGTTGGTCCTGAACATTCTAGgtattatgcg ... ttggtaatagGGAGCAGTTGGTGCCGGCATATGTTCGTCTCCTTCGTGACAATGAGGCGGA
EST: gi|58678838|gb|CK067525.1|CK067525
EST:     GCCAATCAATTGTATGAGCTCTGCGAGGCAGTTGGTCCTGAACATTCTAG                         GGAGCAGTTGGTGCCGGCATATGTTCGTCTCCTTCGTGACAATGAGGCGGA
genomic: GCCAATCAATTGTATGAGCTCTGCGAGGCAGTTGGTCCTGAACATTCTAGgtattatgcg ... ttggtaatagGGAGCAGTTGGTGCCGGCATATGTTCGTCTCCTTCGTGACAATGAGGCGGA