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CTTGGACCTTGATGTTTTGTTTTACCCCTGCCCTAAAAATGGCCCCACTTTCCGTCCAAAGGTTTTAGAGATGGGCGGAAAGCAACAATTTCCTTACATGgtatgcaagtaatcctccataatttcttcagtttcttaggtcatatactcaattacttctgttctacttttacacagctatgaattactaaaaaaatgtt...
species | Oryza sativa |
transcript | LOC_Os08g44400.1 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: AATTTCCTTACATG GTGGATCCAAACACAGGGGTTGCCATGTATGAATCTGATGCCATCATAAAAEST: gi|58590549|gb|CF988857.1|CF988857
genomic: AATTTCCTTACATGgtatgcaagt ... tatgctgcagGTGGATCCAAACACAGGGGTTGCCATGTATGAATCTGATGCCATCATAAAA
EST: TCCGTCCAAAGGTTTTAGAGATGGGCGGAAAGCAACAATTTCCTTACATG GTGGATCCAAACACAGGGGTTGCCATGTATGAATCTGATGCCATCATAAAAEST: gi|29687876|gb|CB684151.1|CB684151
genomic: TCCGTCCAAAGGTTTTAGAGATGGGCGGAAAGCAACAATTTCCTTACATGgtatgcaagt ... tatgctgcagGTGGATCCAAACACAGGGGTTGCCATGTATGAATCTGATGCCATCATAAAA
EST: TCCGTCCAAAGGTTTTAGAGATGGGCGGAAAGCAACAATTTCCTTACATG GTGGATCCAAACACAGGGGTTGCCATGTATGAATCTGATGCCATCATAAAAEST: gi|58593409|gb|CF991717.1|CF991717
genomic: TCCGTCCAAAGGTTTTAGAGATGGGCGGAAAGCAACAATTTCCTTACATGgtatgcaagt ... tatgctgcagGTGGATCCAAACACAGGGGTTGCCATGTATGAATCTGATGCCATCATAAAA
EST: TCCGTCCAAAGGTTTTAGAGATGGGCGGAAAGCAACAAGGTCCTTACATG GTGGATCCAAACACAGGGGTTGCCATGTATGAATCTGATGCCATCATAAAAEST: gi|27548923|gb|CA767585.2|CA767585
genomic: TCCGTCCAAAGGTTTTAGAGATGGGCGGAAAGCAACAATTTCCTTACATGgtatgcaagt ... tatgctgcagGTGGATCCAAACACAGGGGTTGCCATGTATGAATCTGATGCCATCATAAAA
EST: TCCGTCCAAAGGTTTTAGAGATGGGCGGAAAGCAACAATTTCCTTACATG GTGGATCCAAACACAGGGGTTGCCATGTATGAATCTGATGCCATCATAAAAEST: gi|29685102|gb|CB681377.1|CB681377
genomic: TCCGTCCAAAGGTTTTAGAGATGGGCGGAAAGCAACAATTTCCTTACATGgtatgcaagt ... tatgctgcagGTGGATCCAAACACAGGGGTTGCCATGTATGAATCTGATGCCATCATAAAA
EST: TCCGTCCAAAGGTTTTAGAGATGGGCGGAAAGCAACAATTTCCTTACATG GTGGATCCAAACACAGGGGTTGCCATGTATGAATCTGATGCCATCATAAAA
genomic: TCCGTCCAAAGGTTTTAGAGATGGGCGGAAAGCAACAATTTCCTTACATGgtatgcaagt ... tatgctgcagGTGGATCCAAACACAGGGGTTGCCATGTATGAATCTGATGCCATCATAAAA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CTTGGACCTTGATGTTTTGTTTTACCCCTGCCCTAAAAATGGCCCCACTTTCCGTCCAAAGGTTTTAGAGATGGGCGGAAAGCAACAATTTCCTTACATGgtatgcaagtaatcctccataatttcttcagtttcttaggtcatatactcaattacttctgttctacttttacacagctatgaattactaaaaaaatgtt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaaaaaa