1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
GTCGTGAGCAACCCTGAGAAGACTCCACTTCATACTTTCTTCTGCAGCTATGACTTGACAGACATGCCTTCAGGGACCAAGgtacaagacattatgactaatttcagttttaaaaataaattgtgactaatagactttttctttggctcaaattcgaaatagccttgaagcttacttgtca...
species | Oryza sativa |
transcript | LOC_Os08g42420.3 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: CAGGGACCAAG ACTTTCATGCGGCAAAAGGTCACTCTGTCCCCCACTCTTTCCTCCTCTAATEST: gi|33683475|gb|CF311714.1|CF311714
genomic: CAGGGACCAAGgtacaagaca ... aatgggacagACTTTCATGCGGCAAAAGGTCACTCTGTCCCCCACTCTTTCCTCCTCTAAT
EST: ATACTTTCTTCTGCAGCTATGACTTGACAGACATGCCTTCAGGGACCAAG ACTTTCATGCGGCAAAAGGTCACTCTGTCCCCCACTCTTTCCTCCTCTAATEST: gi|58695877|gb|CK084564.1|CK084564
genomic: ATACTTTCTTCTGCAGCTATGACTTGACAGACATGCCTTCAGGGACCAAGgtacaagaca ... aatgggacagACTTTCATGCGGCAAAAGGTCACTCTGTCCCCCACTCTTTCCTCCTCTAAT
EST: ATACTTTCTTCTGCAGCTATGACTTGACAGACATGCCTTCAGGGACCAAG ACTTTCATGCGGCAAAAGGTCACTCTGTCCCCCACTCTTTCCTCCTCTAATEST: gi|58587810|gb|CF986118.1|CF986118
genomic: ATACTTTCTTCTGCAGCTATGACTTGACAGACATGCCTTCAGGGACCAAGgtacaagaca ... aatgggacagACTTTCATGCGGCAAAAGGTCACTCTGTCCCCCACTCTTTCCTCCTCTAAT
EST: ATACTTTCTTCTGCAGCTATGACTTGACAGACATGCCTTCAGGGACCAAG ACTTTCATGCGGCAEST: gi|29674773|gb|CB671048.1|CB671048
genomic: ATACTTTCTTCTGCAGCTATGACTTGACAGACATGCCTTCAGGGACCAAGgtacaagaca ... aatgggacagACTTTCATGCGGCA
EST: ATACTTTCTTCTGCAGCTATGACTTGACAGACATGCCTTCAGGGACCAAG ACTTTCATGCGGCAAAAGGTCACTCTGTCCCCCACTCTTTCCTCCTCTAATEST: gi|218482069|gb|FG950305.1|FG950305
genomic: ATACTTTCTTCTGCAGCTATGACTTGACAGACATGCCTTCAGGGACCAAGgtacaagaca ... aatgggacagACTTTCATGCGGCAAAAGGTCACTCTGTCCCCCACTCTTTCCTCCTCTAAT
EST: ATACTTTCTTCTGCAGCTATGACTTGACAGACATGCCTTCAGGGACCAAG ACTTTCATGCGGCAAAAGGTCACTCTGTCCCCCACTCTTTCCTCCTCTAATEST: gi|25797222|gb|CA753183.1|CA753183
genomic: ATACTTTCTTCTGCAGCTATGACTTGACAGACATGCCTTCAGGGACCAAGgtacaagaca ... aatgggacagACTTTCATGCGGCAAAAGGTCACTCTGTCCCCCACTCTTTCCTCCTCTAAT
EST: ATACTTTCTTCTGCAGCTATGACTTGACAGACATGCCTTCAGGGACCAAG ACTTTCATGCGGCAAAAGGTCACTCTGTCCCCCACTCTTTCCTCCTCTAAT
genomic: ATACTTTCTTCTGCAGCTATGACTTGACAGACATGCCTTCAGGGACCAAGgtacaagaca ... aatgggacagACTTTCATGCGGCAAAAGGTCACTCTGTCCCCCACTCTTTCCTCCTCTAAT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTCGTGAGCAACCCTGAGAAGACTCCACTTCATACTTTCTTCTGCAGCTATGACTTGACAGACATGCCTTCAGGGACCAAGgtacaagacattatgactaatttcagttttaaaaataaattgtgactaatagactttttctttggctcaaattcgaaatagccttgaagcttacttgtca
- - - - - - - - - - - - - - - - - - - - CTGCAG
- - - - - - - - - - - - - - - - - - - - - GCAGCT