1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
GAGCAAGCTACCTAACTGGCACGAGTACCCCCAGTGGAATCCCTCGAAAGTGTCTGATCTTGTCCATGGTCTCGACGCTGATGCTCTTGATCTTCTTGAGgtttgtactatgctgcttttgctcgttgctatacttgattattttcttctacttcaaaatcgatgtacaatgttaggtgtaaactgtatcatgaacgtaaaatggaagaaaggtgttatcaattgaattgaatcctgacatggttcttgttttcgattgcag
species | Oryza sativa |
transcript | LOC_Os08g40170.1 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: TGTCTGATCTTGTCCATGGTCTCGACGCTGATGCTCTTGATCTTCTTGAG AAAATGCTGCAGTACGAGCCGTCGAAGCGGATCTCTGCGAAGAAGGCCATGEST: gi|58604123|gb|CK014651.1|CK014651
genomic: TGTCTGATCTTGTCCATGGTCTCGACGCTGATGCTCTTGATCTTCTTGAGgtttgtacta ... tcgattgcagAAAATGCTGCAGTACGAGCCGTCGAAGCGGATCTCTGCGAAGAAGGCCATG
EST: TGTCTGATCTTGTCCATGGTCTCGACGCTGATGCTCTTGATCTTCTTGAG AAAATGTTGCAGTACGAGCCGTACGAAGCGGATCTCTGCGAAGAAGGCCATEST: gi|33801905|gb|CF326824.1|CF326824
genomic: TGTCTGATCTTGTCCATGGTCTCGACGCTGATGCTCTTGATCTTCTTGAGgtttgtacta ... tcgattgcagAAAATGCTGCAGTACGAGCCGT-CGAAGCGGATCTCTGCGAAGAAGGCCAT
EST: TGTCTGATCTTGTCCATGGTCTCGACGCTGATGCTCTTGATCTTCTTGAG AAAATGCTGCAGTACGAGCCGTCGAAGCGGATCTTTGCGAAGAAGGCCATGEST: gi|89175978|gb|CI042999.1|CI042999
genomic: TGTCTGATCTTGTCCATGGTCTCGACGCTGATGCTCTTGATCTTCTTGAGgtttgtacta ... tcgattgcagAAAATGCTGCAGTACGAGCCGTCGAAGCGGATCTCTGCGAAGAAGGCCATG
EST: TGTCTGATCTTGTCCATGGTCTCGACGCTGATGCTCTTGATCTTCTTGAG AAAATGCTGCAGTACGAGCCGTCGAAGCGGATCTCTGCGAAGAAGGCCATGEST: gi|86421815|gb|CI059388.1|CI059388
genomic: TGTCTGATCTTGTCCATGGTCTCGACGCTGATGCTCTTGATCTTCTTGAGgtttgtacta ... tcgattgcagAAAATGCTGCAGTACGAGCCGTCGAAGCGGATCTCTGCGAAGAAGGCCATG
EST: TGTCTGATCTTGTCCATGGTCTCGACGCTGATGCTCTTGATCTTCTTGAG AAAATGCTGCAGTACGAGCCGTCGAAGCGGATCTCTGCGAAGAAGGCCATGEST: gi|88962742|gb|CI023842.1|CI023842
genomic: TGTCTGATCTTGTCCATGGTCTCGACGCTGATGCTCTTGATCTTCTTGAGgtttgtacta ... tcgattgcagAAAATGCTGCAGTACGAGCCGTCGAAGCGGATCTCTGCGAAGAAGGCCATG
EST: TGTCTGATCTTGTCCATGGTCTCGACGCTGATGCTCTTGATCTTCTTGAG AAAATGCTGCAGTACGAGCCGTCGAAGCGGATCTCTGCGAAGAAGGCCATGEST: gi|86496840|gb|CI139473.1|CI139473
genomic: TGTCTGATCTTGTCCATGGTCTCGACGCTGATGCTCTTGATCTTCTTGAGgtttgtacta ... tcgattgcagAAAATGCTGCAGTACGAGCCGTCGAAGCGGATCTCTGCGAAGAAGGCCATG
EST: TGTCTGATCTTGTCCATGGTCTCGACGCTGATGCTCTTGATCTTCTTGAG AAAATGCTGCAGTACGAGCCGTCGAAGCGGATCTCTGCGAAGAAGGCCATGEST: gi|88961833|gb|CI096986.1|CI096986
genomic: TGTCTGATCTTGTCCATGGTCTCGACGCTGATGCTCTTGATCTTCTTGAGgtttgtacta ... tcgattgcagAAAATGCTGCAGTACGAGCCGTCGAAGCGGATCTCTGCGAAGAAGGCCATG
EST: TGTCTGATCTTGTCCATGGTCTCGACGCTGATGCTCTTGATCTTCTTGAG AAAATGCTGCAGTACGAGCCGTCGAAGCGGATCTCTGCGAAGAAGGCCATGEST: gi|86593618|gb|CI264497.1|CI264497
genomic: TGTCTGATCTTGTCCATGGTCTCGACGCTGATGCTCTTGATCTTCTTGAGgtttgtacta ... tcgattgcagAAAATGCTGCAGTACGAGCCGTCGAAGCGGATCTCTGCGAAGAAGGCCATG
EST: TGTCTGATCTTGTCCATGGTCTCGACGCTGATGCTCTTGATCTTCTTGAG AAAATGTTGCAGTACGAGCCGTCGAAGCGGATCTCTGCGAAGAAGGCCATGEST: gi|88850591|gb|CI094856.1|CI094856
genomic: TGTCTGATCTTGTCCATGGTCTCGACGCTGATGCTCTTGATCTTCTTGAGgtttgtacta ... tcgattgcagAAAATGCTGCAGTACGAGCCGTCGAAGCGGATCTCTGCGAAGAAGGCCATG
EST: TGTCTGATCTTGTCCATGGTCTCGACGCTGATGCTCTTGATCTTCTTGAG AAAATGCTGCAGTACGAGCCGTCGAAGCGGATCTCTGCGAAGAAGGCCATGEST: gi|58603848|gb|CK014376.1|CK014376
genomic: TGTCTGATCTTGTCCATGGTCTCGACGCTGATGCTCTTGATCTTCTTGAGgtttgtacta ... tcgattgcagAAAATGCTGCAGTACGAGCCGTCGAAGCGGATCTCTGCGAAGAAGGCCATG
EST: TGTCTGATCTTGTCCATGGTCTCGACGCTGATGCTCTTGATCTTCTTGAG AAAATGCTGCAGTACGAGCCGTCGAAGCGGATCTCTGCGAAGAAGGCCATGEST: gi|88975465|gb|CI023716.1|CI023716
genomic: TGTCTGATCTTGTCCATGGTCTCGACGCTGATGCTCTTGATCTTCTTGAGgtttgtacta ... tcgattgcagAAAATGCTGCAGTACGAGCCGTCGAAGCGGATCTCTGCGAAGAAGGCCATG
EST: TGTCTGATCTTGTCCATGGTCTCGACGCTGATGCTCTTGATCTTCTTGAG AAAATGCTGCAGTACGAGCCGTCGAAGCGGATCTCTGCGAAGAAGGCCATG
genomic: TGTCTGATCTTGTCCATGGTCTCGACGCTGATGCTCTTGATCTTCTTGAGgtttgtacta ... tcgattgcagAAAATGCTGCAGTACGAGCCGTCGAAGCGGATCTCTGCGAAGAAGGCCATG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GAGCAAGCTACCTAACTGGCACGAGTACCCCCAGTGGAATCCCTCGAAAGTGTCTGATCTTGTCCATGGTCTCGACGCTGATGCTCTTGATCTTCTTGAGgtttgtactatgctgcttttgctcgttgctatacttgattattttcttctacttcaaaatcgatgtacaatgttaggtgtaaactgtatcatgaacgtaaaatggaagaaaggtgttatcaattgaattgaatcctgacatggttcttgttttcgattgcag
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