1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
AAAACTTAAACAACTCTTTGGATGTGAAAGTCTAACTGCCGTGAGTGTTTCGGAGTTGCTGTCACAACACCTTTTCAAGCAACCTAACAAGCTCTAACTGgttagttatttcctttcagaacaacatcatgtattgagacttgcactggttagtgtttgctagatgacatccatccctgcttgcaactcctagttagtat...
species | Oryza sativa |
transcript | LOC_Os08g39310.1 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: CGGAGTTGCTGTCACAACACCTTTTCAAGCAACCTAACAAGCTTTAACTG ATGAATCGTCTTACTGGACTTTAGTTGGTCTAACACCCTGGTAGTAGGCGCEST: gi|88227196|gb|CI228309.1|CI228309
genomic: CGGAGTTGCTGTCACAACACCTTTTCAAGCAACCTAACAAGCTCTAACTGgttagttatt ... tgttttgcagATGAATCGTCTTACTGGACTCTAGTTGGTCTAACACCCTGGTAGTAGGCGC
EST: CGGAGTTGCTGTCACAACACCTTTTCAAGCAACCTAACAAGCTCTAACTG ATGAATCGTCTTACTGGACTCTAGTTGGTCTAACACCCTGGTAGTAGGCGCEST: gi|87026983|gb|CI259636.1|CI259636
genomic: CGGAGTTGCTGTCACAACACCTTTTCAAGCAACCTAACAAGCTCTAACTGgttagttatt ... tgttttgcagATGAATCGTCTTACTGGACTCTAGTTGGTCTAACACCCTGGTAGTAGGCGC
EST: CGGAGTTGCTGTCACAACACCTTTTCAAGCAACCTAACAAGCTCTAACTG ATGAATCGTCTTACTGGACTCTAGTTGGTCTAACACCCTGGTAGTAGGCGCEST: gi|86421229|gb|CI057218.1|CI057218
genomic: CGGAGTTGCTGTCACAACACCTTTTCAAGCAACCTAACAAGCTCTAACTGgttagttatt ... tgttttgcagATGAATCGTCTTACTGGACTCTAGTTGGTCTAACACCCTGGTAGTAGGCGC
EST: CGGAGTTGCTGTCACAACACCTTTTCAAGCAACCTAACAAGCTCTAACTG ATGAATCGTCTTACTGGACTCTAGTTGGTCTAACACCCTGGTAGTAGGCGCEST: gi|29643027|gb|CB648034.1|CB648034
genomic: CGGAGTTGCTGTCACAACACCTTTTCAAGCAACCTAACAAGCTCTAACTGgttagttatt ... tgttttgcagATGAATCGTCTTACTGGACTCTAGTTGGTCTAACACCCTGGTAGTAGGCGC
EST: CGGAGTTGCTGTCACAACACCTTTTCAAGCAACCTAACAAGCTCTAACTG ATGAATCGTCTTACTGGACTCTAGTTGGTCTAACACCCTGGTAGTAGGCGCEST: gi|29619019|gb|CB624031.1|CB624031
genomic: CGGAGTTGCTGTCACAACACCTTTTCAAGCAACCTAACAAGCTCTAACTGgttagttatt ... tgttttgcagATGAATCGTCTTACTGGACTCTAGTTGGTCTAACACCCTGGTAGTAGGCGC
EST: CGGAGTTGCTGTCACAACACCTTTTCAAGCAACCTAACAAGCTCTAACTG ATGAATCGTCTTACTGGACTCTAGTTGGTCTAACACCCTGGTAGTAGGCGCEST: gi|29682543|gb|CB678818.1|CB678818
genomic: CGGAGTTGCTGTCACAACACCTTTTCAAGCAACCTAACAAGCTCTAACTGgttagttatt ... tgttttgcagATGAATCGTCTTACTGGACTCTAGTTGGTCTAACACCCTGGTAGTAGGCGC
EST: CGGAGTTGCTGTCACAACACCTTTTCAAGCAACCTAACAAGCTCTAACTG ATGAATCGTCTTACTGGACTCTAGTTGGTCTAACACCCTGGTAGTACGCGCEST: gi|29667306|gb|CB663581.1|CB663581
genomic: CGGAGTTGCTGTCACAACACCTTTTCAAGCAACCTAACAAGCTCTAACTGgttagttatt ... tgttttgcagATGAATCGTCTTACTGGACTCTAGTTGGTCTAACACCCTGGTAGTAGGCGC
EST: CGGAGTTGCTGTCACAACACCTTTTCAAGCAACCTAACAAGCTCTAACTG ATGAATCGTCTTACTGGACTCTAGTTGGTCTAACACCCTGGTAGTAGGCGCEST: gi|29657921|gb|CB654196.1|CB654196
genomic: CGGAGTTGCTGTCACAACACCTTTTCAAGCAACCTAACAAGCTCTAACTGgttagttatt ... tgttttgcagATGAATCGTCTTACTGGACTCTAGTTGGTCTAACACCCTGGTAGTAGGCGC
EST: CGGAGTTGCTGTCACAACACCTTTTCAAGCAACCTAACAAGCTCTAACTG ATGAATCGTCTTACTGGACTCTAGTTGGTCTAACACCCTGGTAGTAGGCGCEST: gi|29619017|gb|CB624029.1|CB624029
genomic: CGGAGTTGCTGTCACAACACCTTTTCAAGCAACCTAACAAGCTCTAACTGgttagttatt ... tgttttgcagATGAATCGTCTTACTGGACTCTAGTTGGTCTAACACCCTGGTAGTAGGCGC
EST: CGGAGTTGCTGTCACAACACCTTTTCAAGCAACCTAACAAGCTCTAACTG ATGAATCGTCTTACTGGACTCTAGTTGGTCTAACACCCTGGTAGTAGGCGC
genomic: CGGAGTTGCTGTCACAACACCTTTTCAAGCAACCTAACAAGCTCTAACTGgttagttatt ... tgttttgcagATGAATCGTCTTACTGGACTCTAGTTGGTCTAACACCCTGGTAGTAGGCGC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AAAACTTAAACAACTCTTTGGATGTGAAAGTCTAACTGCCGTGAGTGTTTCGGAGTTGCTGTCACAACACCTTTTCAAGCAACCTAACAAGCTCTAACTGgttagttatttcctttcagaacaacatcatgtattgagacttgcactggttagtgtttgctagatgacatccatccctgcttgcaactcctagttagtat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ccatccc