1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
GCGTTGTTGTTCAGACCACAAGTGAGGTTGACATCCTTGATGATGGTTACCGTTGGCGCAAGTATGGGCAGAAAGTTGTCAAAGGAAACCCAAATCCAAGgtcaattctaatgccatttttctcttttggaacaaattctttgcagttcctctaatccttcactacaaaagtaaatgtttagcttcacaatatgacactg...
species | Oryza sativa |
transcript | LOC_Os08g38990.1 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: CGTTGGCGCAAGTATGGGCAGAAAGTTGTCAAAGGAAACCCAAATCCAAG GAGCTACTACAAGTGCACTCATCCGGGTTGCTCGGTGCGCAAGCATGTGGAEST: gi|29662845|gb|CB659120.1|CB659120
genomic: CGTTGGCGCAAGTATGGGCAGAAAGTTGTCAAAGGAAACCCAAATCCAAGgtcaattcta ... gtatttgcagGAGCTACTACAAGTGCACTCATCCGGGTTGCTCGGTGCGCAAGCATGTGGA
EST: CGTTGGCGCAAGTATGGGCAGAAAGTTGTCAAAGGAAACCCAAATCCAAG GAGCTACTACAAGTGCACTCATCCGGGTTGCTCGGTGCGCAAGCATGTGGAEST: gi|218495535|gb|FG950464.1|FG950464
genomic: CGTTGGCGCAAGTATGGGCAGAAAGTTGTCAAAGGAAACCCAAATCCAAGgtcaattcta ... gtatttgcagGAGCTACTACAAGTGCACTCATCCGGGTTGCTCGGTGCGCAAGCATGTGGA
EST: CGTTGGCGCAAGTATGGGCAGAAAGTTGTCAAAGGAAACCCAAATCCAAG GAGCTACTACAAGTGCACTCATCCGGGTTGCTCGGTGCGCAAGCATGTGGAEST: gi|218484605|gb|FG964494.1|FG964494
genomic: CGTTGGCGCAAGTATGGGCAGAAAGTTGTCAAAGGAAACCCAAATCCAAGgtcaattcta ... gtatttgcagGAGCTACTACAAGTGCACTCATCCGGGTTGCTCGGTGCGCAAGCATGTGGA
EST: CGTTGGCGCAAGTATGGGCAGAAAGTTGTCAAAGGAAACCCAAATCCAAG GAGCTACTACAAGTGCACTCATCCGGGTTGCTCGGTGCGCAAGCATGTGGAEST: gi|29662844|gb|CB659119.1|CB659119
genomic: CGTTGGCGCAAGTATGGGCAGAAAGTTGTCAAAGGAAACCCAAATCCAAGgtcaattcta ... gtatttgcagGAGCTACTACAAGTGCACTCATCCGGGTTGCTCGGTGCGCAAGCATGTGGA
EST: CGTTGGCGCAAGTATGGGCAGAAAGTTGTCAAAGGAAACCCAAATCCAAG GAGCTACTACAAGTGCACTCATCCGGGTTGCTCGGTGCGCAAGCATGTGGA
genomic: CGTTGGCGCAAGTATGGGCAGAAAGTTGTCAAAGGAAACCCAAATCCAAGgtcaattcta ... gtatttgcagGAGCTACTACAAGTGCACTCATCCGGGTTGCTCGGTGCGCAAGCATGTGGA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GCGTTGTTGTTCAGACCACAAGTGAGGTTGACATCCTTGATGATGGTTACCGTTGGCGCAAGTATGGGCAGAAAGTTGTCAAAGGAAACCCAAATCCAAGgtcaattctaatgccatttttctcttttggaacaaattctttgcagttcctctaatccttcactacaaaagtaaatgtttagcttcacaatatgacactg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA