1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
TTGGGAGAACAGGAAAGCATTTATTCCTTACAGACAATGATGATGGCAGACGCCCACTCCTCCTTCAAATGGTTGATGACTGTGATGATATAAAATTCAGgttattttctgtatgatttatgttgtcttatgtgtttaaaatggttggtgaatgtaaatgtacagaaatgaagttcattttctgtatgtttaccttcagtttcccaaagtagtccaaaaatgtttgggtatcatttctgagcacaatatgttctgttatgcag
species | Oryza sativa |
transcript | LOC_Os08g34750.1 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: CGCCCACTCCTCCTTCAAATGGTTGATGACTGTGATGATATAAAATTCAG ATCAGCGTTGCGCTCTTTCAAACGACGTGTGGCATATGCTAATGCAAACTTEST: gi|29624696|gb|CB629707.1|CB629707
genomic: CGCCCACTCCTCCTTCAAATGGTTGATGACTGTGATGATATAAAATTCAGgttattttct ... tgttatgcagATCAGCGTTGCGCTCTTTCAAACGACGTGTGGCATATGCTAATGCAAACTT
EST: CGCCCACTCCTCCTTCAAATGGTTGATGACTGTGATGATATAAAATTCAG ATCAGCGTTGCGCTCTTTCAAACGACGTGTGGCATATGCTAATGCAAACTTEST: gi|27577773|gb|CB000468.1|CB000468
genomic: CGCCCACTCCTCCTTCAAATGGTTGATGACTGTGATGATATAAAATTCAGgttattttct ... tgttatgcagATCAGCGTTGCGCTCTTTCAAACGACGTGTGGCATATGCTAATGCAAACTT
EST: CGCCCACTCCTCCTTCAAATGGTTGATGACTGTGATGATATAAAATTCAG ATCAGCGTTGCGCTCTTTCAAACGACGTGTGGCATATGCTAATGCAAACTTEST: gi|29677871|gb|CB674146.1|CB674146
genomic: CGCCCACTCCTCCTTCAAATGGTTGATGACTGTGATGATATAAAATTCAGgttattttct ... tgttatgcagATCAGCGTTGCGCTCTTTCAAACGACGTGTGGCATATGCTAATGCAAACTT
EST: CGCCCACTCCTCCTTCAAATGGTTGATGACTGTGATGATATAAAATTCAG ATCAGCGTTGCGCTCTTTCAAACGACGTGTGGCATATGCTAATGCAAACTTEST: gi|29678642|gb|CB674917.1|CB674917
genomic: CGCCCACTCCTCCTTCAAATGGTTGATGACTGTGATGATATAAAATTCAGgttattttct ... tgttatgcagATCAGCGTTGCGCTCTTTCAAACGACGTGTGGCATATGCTAATGCAAACTT
EST: CGCCCACTCCTCCTTCAAATGGTTGATGACTGTGATGATATAAAATTCAG ATCAGCGTTGCGCTCTTTCAAACGACGTGTGGCATATGCTAATGCAAACTTEST: gi|27576057|gb|CA998751.1|CA998751
genomic: CGCCCACTCCTCCTTCAAATGGTTGATGACTGTGATGATATAAAATTCAGgttattttct ... tgttatgcagATCAGCGTTGCGCTCTTTCAAACGACGTGTGGCATATGCTAATGCAAACTT
EST: CGCCCACTCCTTCTTCAAATGGTTGATGACTGTGATGATATAAAATTCAG ATCAGCGTTGCGCTCTTTCAAACGACGTGTGGCATATGCTAATGCAAACTTEST: gi|29674047|gb|CB670322.1|CB670322
genomic: CGCCCACTCCTCCTTCAAATGGTTGATGACTGTGATGATATAAAATTCAGgttattttct ... tgttatgcagATCAGCGTTGCGCTCTTTCAAACGACGTGTGGCATATGCTAATGCAAACTT
EST: CGCCCACTCCTCCTTCAAATGGTTGATGACTGTGATGATATAAAATTCAG ATCAGCGTTGCGCTCTTTCAAACGACGTGTGGCATATGCTAATGCAAACTT
genomic: CGCCCACTCCTCCTTCAAATGGTTGATGACTGTGATGATATAAAATTCAGgttattttct ... tgttatgcagATCAGCGTTGCGCTCTTTCAAACGACGTGTGGCATATGCTAATGCAAACTT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TTGGGAGAACAGGAAAGCATTTATTCCTTACAGACAATGATGATGGCAGACGCCCACTCCTCCTTCAAATGGTTGATGACTGTGATGATATAAAATTCAGgttattttctgtatgatttatgttgtcttatgtgtttaaaatggttggtgaatgtaaatgtacagaaatgaagttcattttctgtatgtttaccttcagtttcccaaagtagtccaaaaatgtttgggtatcatttctgagcacaatatgttctgttatgcag
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