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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATATTTACTTCCTGAACATGTCCCCACCTGTCACCTGCGCATAACCTTTTCTGCGCACAAGGATTTGAATATCAAGTTTCAATCACATCGTAGCAGgtaaagagggaagctggcgatgtttaaatttgattttaacctccattagcatatgcttgatgagacaatactcaaattcacatcactaactgtttggttacag

Basic information

species Oryza sativa
transcript LOC_Os08g33830.2
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os08g33830.2 (Oryza sativa), 5'ss of exon 5
lower sequence: GRMZM2G082174_T05 (Zea mays), 5'ss of exon 3
ATATTTACTTCCTGAACATGTCCCCACCTGTCACCTGCGCATAACCTTTTCTGCGCACAAGGATTTGAATATCAAGTTTCAATCACATCGTAGCAGgtaaagagggaagctggcgatgtttaaatttgattttaacctccattagcatatgcttgatgagacaatactcaaattcacatcactaactgtttggttacag----------------------------------------
|||||||||||| |||||| ||    |||| ||| |||||||||||||||||||||| ||||||||||||||||| ||||| || ||||| ||||||||      |||  ||||      |||| |   ||    | |||  | |   |||||| |    |  || ||   |    |    |||  | ||      |                                          
ATATTTACTTCCAGAACATATCGGTGCCTGCCACATGCGCATAACCTTTTCTGCGCATAAGGATTTGAATATCAAATTTCAGTCGCATCGCAGCAGgtacta---gaaattggcatcagctaaagtc--ttgcggcttcctgttgataatgcttaaaattattatccttttaagtgctatgctatttattaaccatctaacccttgtgaattgtgatcctatttttgttcatttaacag

upper sequence: LOC_Os08g33830.2 (Oryza sativa), 5'ss of exon 5
lower sequence: GRMZM2G178169_T01 (Zea mays), 5'ss of exon 5
ATATTTACTTCCTGAACATGTCCCCACCTGTCACCTGCGCATAACCTTTTCTGCGCACAAGGATTTGAATATCAAGTTTCAATCACATCGTAGCAGgtaaagagggaagctggcgatgtttaaatttgattttaacctccattagcatatgcttgatgagacaatac----tcaaattc-acatcactaactgtttggttacag------------------------------------
|||||||||||| |||||| ||    |||| ||| ||||||||||||| ||||| || ||||||||||||||||| ||||| || ||||| ||||||||      |||  ||||      ||| | |   |    | |||| | |   |||||| |  ||| | ||     | || | | |    | | | |      |||                                       
ATATTTACTTCCAGAACATATCAGTGCCTGCCACATGCGCATAACCTTCTCTGCACATAAGGATTTGAATATCAAATTTCAGTCGCATCGCAGCAGgtatta---gaaagtggcataagctaagtct---tgcggcttccaattgataatgcttaa-aagatattatctttttaagtgctatgctatttattaaccatttatcccttgtgaattgtgatactattttgttgatttaacag