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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGAGGCATAATGGCTGTCGGAGCCTCAAAACCTACAGTGGTGGCTGATAAAGATGGTTTCTTTAGTGTCAAGAGCAAAATGCTGgttagttgcccttcacacatgcaatttttcagccaatactggaaattagtgattgttatattagtatgttgggaagtgcttctgtgctcctcaataaaaa...

Basic information

species Oryza sativa
transcript LOC_Os08g33440.1
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os08g33440.1 (Oryza sativa), 5'ss of exon 5
lower sequence: GRMZM2G117786_T01 (Zea mays), 5'ss of exon 5
GGAGGCATAATGGCTGTCGGAGCCTCAAAACCTACAGTGGTGGCTGATAAAGATGGTTTCTTTAGTGTCAAGAGCAAAATGCTGgttagttgcccttcacacatgcaatttttcagccaatactggaaattagtgatt-gttatattagtatgttgggaagtgcttctgtgctcctcaataaaaa-
||||  || |||||||| |||||||| ||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||     |  |  ||   ||   || ||  |  | | |  |||   ||   |||  |   || |||  |  |     ||| |  |  | | |    
GGAGCTATTATGGCTGTTGGAGCCTCGAAACCTACAGTTGTGGCTGATAAAGATGGTTTCTTTAGCGTCAAGAGCAAAATGCTGgttagttgtgtacctgat-tgtt-ttagacatccgttggttgcatatagcatttcagtatggtgaaatattgatagttctacttgtacctcgtactgatttt

upper sequence: LOC_Os08g33440.1 (Oryza sativa), 5'ss of exon 5
lower sequence: GRMZM2G058702_T01 (Zea mays), 5'ss of exon 5
GGAGGCATAATGGCTGTCGGAGCCTCAAAACCTACAGTGGTGGCTGATAAAGATGGTTTCTTTAGTGTCAAGAGCAAAATGCTGgttagttgcccttcacacatgcaatttttcagccaatactggaaattagtg-attgttatattagtatgttgggaagtgcttctgtgctcctcaataaaaa-
||||  || |||||||| |||||||| ||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||     |  |  || |||    || |   || | | |  || || ||   |||  |   |||||   |  |     | | |  |  |  ||    
GGAGCTATTATGGCTGTTGGAGCCTCGAAACCTACAGTTGTGGCTGATAAAGATGGTTTCTTTAGCGTCAAGAGCAAAATGCTGgttagttgtgtacctgat-tgtaataga-catctgttatttgcatataatgtatcagtatggtgaaatgtttatagttttacttctacatcctaccaatttt

upper sequence: LOC_Os08g33440.1 (Oryza sativa), 5'ss of exon 5
lower sequence: GLYMA20G24830.2 (Glycine max), 5'ss of exon 5
GGAGGCATAATGGCTGTCGGAGCCTCAAAACCTACAGTGGTGGCTGATAAAGATGGTTTCTTTAGTGTCAAGAGCAAAATGCTGgttagttgcccttcaca-catgcaatt--tttcagccaatactggaaattagtgattgttatattagtatgttgggaagtgcttctgtgctcctcaataaaaa
|| |  || |||||||| || || ||||| ||||| ||  |||||||||||||||| ||||| || || ||||  ||||||||||| |||| |   ||| | | |  || |  ||| |     |  || | ||  |   ||   | | | |   |     | |||  |     ||| |   |     
GGTGCTATCATGGCTGTTGGCGCATCAAAGCCTACTGTTCTGGCTGATAAAGATGGATTCTTCAGCGTGAAGAATAAAATGCTGgtgagttacttgtcatagcttataactacttttatttgtttgtgcacatatgct-ttagaacaatggacagaattcaggtgaatacagactcttttttgtg--

upper sequence: LOC_Os08g33440.1 (Oryza sativa), 5'ss of exon 5
lower sequence: Vv01s0011g03380.t01 (Vitis vinifera), 5'ss of exon 5
GGAGGCATAATGGCTGTCGGAGCCTCAAAACCTACAGTGGTGGCTGATAAAGATGGTTTCTTTAGTGTCAAGAGCAAAATGCTGgttagttgcccttcacacatgcaatttttcagccaatactggaaattagtgattgttatattagtatgttgggaagtgcttctgtgctcctcaataaaaa----
|| |  || ||||| || ||||| ||||| ||||| || ||  ||||||||||||| ||||| ||||| || || ||||||||||| ||||    |    |  |  |  |  |||    || ||   |||   ||| |      |   | ||      |  | | |    |   |||||||  |    
GGGGCTATCATGGCCGTTGGAGCTTCAAAGCCTACTGTTGTCACTGATAAAGATGGATTCTTCAGTGTTAAAAGTAAAATGCTGgtgagtttatttctgtattttga--tgctcaaatgatgctttcaat-gttgactagctgttagatgtgacattgaa-gatccaaatcctatcaataaccatttc

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86498267|gb|CI140900.1|CI140900
EST:     CAGTGGTGGCTGATAAAGATGGTTTCTTTAGTGTCAAGAGCAAAATGCTG                         GTTAATGTCACTGCTGATCACAGAATTGTATACGGTGCTGATCTGGCAGCA
genomic: CAGTGGTGGCTGATAAAGATGGTTTCTTTAGTGTCAAGAGCAAAATGCTGgttagttgcc ... atttttttagGTTAATGTCACTGCTGATCACAGAATTGTATACGGTGCTGATCTGGCAGCA
EST: gi|86502788|gb|CI145421.1|CI145421
EST:     CAGTGGTGGCTGATAAAGATGGTTTCTTTAGTGTCAAGAGCAAAATGCTG                         GTTAATGTCACTGCTGATCACAGAATTGTATACGGTGCTGATCTGGCAGCA
genomic: CAGTGGTGGCTGATAAAGATGGTTTCTTTAGTGTCAAGAGCAAAATGCTGgttagttgcc ... atttttttagGTTAATGTCACTGCTGATCACAGAATTGTATACGGTGCTGATCTGGCAGCA
EST: gi|88429875|gb|CI562686.1|CI562686
EST:     CAGTGGTGGCTGATAAAGATGGTTTCTTTAGTGTCAAGAGCAAAATGCTG                         GTTAATGTCACTGCTGATCACAGAATTGTATACGGTGCTGATCTGGCAGCA
genomic: CAGTGGTGGCTGATAAAGATGGTTTCTTTAGTGTCAAGAGCAAAATGCTGgttagttgcc ... atttttttagGTTAATGTCACTGCTGATCACAGAATTGTATACGGTGCTGATCTGGCAGCA
EST: gi|86836276|gb|CI346253.1|CI346253
EST:     AGGTGGTGGCTGATAAAGATGGTTTCTTTAGTGTCAAGAGCAAAATGCTG                         GTTAAT-TCACTGCTGATCACAGAATTGTATACGGTGCTGATCTGGCAGCA
genomic: A-GTGGTGGCTGATAAAGATGGTTTCTTTAGTGTCAAGAGCAAAATGCTGgttagttgcc ... atttttttagGTTAATGTCACTGCTGATCACAGAATTGTATACGGTGCTGATCTGGCAGCA
EST: gi|58585893|gb|CF984201.1|CF984201
EST:     CAGTGGTGGCTGATAAAGATGGTTTCTTTAGTGTCAAGAGCAAAATGCTG                         GTTAATGTCACGGCTGATCACAGAATTGTATACGGTGCTGATCTGGCAGCA
genomic: CAGTGGTGGCTGATAAAGATGGTTTCTTTAGTGTCAAGAGCAAAATGCTGgttagttgcc ... atttttttagGTTAATGTCACTGCTGATCACAGAATTGTATACGGTGCTGATCTGGCAGCA
EST: gi|88551307|gb|CI481352.1|CI481352
EST:     CAGTGGTGGCTGATAAAGATGGTTTCTTTAGTGTCAAGAGCAAAATGCTG                         GTTAATGTCACTGCTGATCACAGAATTGTATACGGTGCTGATCTGGCAGCA
genomic: CAGTGGTGGCTGATAAAGATGGTTTCTTTAGTGTCAAGAGCAAAATGCTGgttagttgcc ... atttttttagGTTAATGTCACTGCTGATCACAGAATTGTATACGGTGCTGATCTGGCAGCA
EST: gi|88486197|gb|CI423468.1|CI423468
EST:     CAGTGGTGGCTTATAAAGATGGTTTCTTTAGTGTCAAGAGCAAAATGCTG                         GTTAATGTCACTGCTGATCACAGAATTGTATACGGTNCTGATCTGGCAGCA
genomic: CAGTGGTGGCTGATAAAGATGGTTTCTTTAGTGTCAAGAGCAAAATGCTGgttagttgcc ... atttttttagGTTAATGTCACTGCTGATCACAGAATTGTATACGGTGCTGATCTGGCAGCA
EST: gi|88221684|gb|CI221640.1|CI221640
EST:     CAGTGGTGGCTGATAAAGATGGTTTCTTTAGTGTCAAGAGCAAAATGCTG                         GTTAATGTCACTGCTGATCACAGAATTGTATACGGTGCTGATCTGGCAGCA
genomic: CAGTGGTGGCTGATAAAGATGGTTTCTTTAGTGTCAAGAGCAAAATGCTGgttagttgcc ... atttttttagGTTAATGTCACTGCTGATCACAGAATTGTATACGGTGCTGATCTGGCAGCA
EST: gi|86499821|gb|CI142454.1|CI142454
EST:     CAGTGGTGGCTGATAAAGATGGTTTCTTTAGTGTCAAGAGCAAAATGCTG                         GTTAATGTCACTGCTGATCACAGAATTGTATACGGTGCTGATCTGGCAGCA
genomic: CAGTGGTGGCTGATAAAGATGGTTTCTTTAGTGTCAAGAGCAAAATGCTGgttagttgcc ... atttttttagGTTAATGTCACTGCTGATCACAGAATTGTATACGGTGCTGATCTGGCAGCA
EST: gi|86493670|gb|CI136303.1|CI136303
EST:     CAGTGGTGGCTGATAAAGATGGTTTCTTTAGTGTCAAGAGCAAAATGCTG                         GTTAATGTCACTGCTGATCACAGAATTGTATACGGTGCTGATCTGGCAGCA
genomic: CAGTGGTGGCTGATAAAGATGGTTTCTTTAGTGTCAAGAGCAAAATGCTGgttagttgcc ... atttttttagGTTAATGTCACTGCTGATCACAGAATTGTATACGGTGCTGATCTGGCAGCA
EST: gi|88531893|gb|CI458413.1|CI458413
EST:     CAGTGGTGGCTGATAAAGATGGTTTCTTTAGTGTCAAGAGCAAAATGCTG                         GTTAATGTCACTGCTGATCACAGAATTGTATACGGTGCTGATCTGGCAGCA
genomic: CAGTGGTGGCTGATAAAGATGGTTTCTTTAGTGTCAAGAGCAAAATGCTGgttagttgcc ... atttttttagGTTAATGTCACTGCTGATCACAGAATTGTATACGGTGCTGATCTGGCAGCA
EST: gi|3768201|gb|AU032228.1|AU032228
EST:     TGGTGGCTGATAAAAATGG-TTCNTTAGTGTCAAGAGCAAAAATGCTG                         GTTAATGCCACTGCTGATCACAGAATTGTATACGGTGCTGATCTGGCAAG
genomic: TGGTGGCTGATAAAGATGGTTTCTTTAGTGTCAAGAGC-AAAATGCTGgttagttgcc ... atttttttagGTTAATGTCACTGCTGATCACAGAATTGTATACGGTGCTGATCTGGC-AG
EST: gi|88957325|gb|CI095286.1|CI095286
EST:     CAGTGGTGGCTGATAAAGATGGTTTCTTTAGTGTCAAGAGCAAAATGCTG                         GTTAATGTCACTGCTGATCACAGAATGGTATACGGTGCTGATCTGGCAGCA
genomic: CAGTGGTGGCTGATAAAGATGGTTTCTTTAGTGTCAAGAGCAAAATGCTGgttagttgcc ... atttttttagGTTAATGTCACTGCTGATCACAGAATTGTATACGGTGCTGATCTGGCAGCA
EST: gi|88248712|gb|CI248561.1|CI248561
EST:     CAGTGGTGGCTGATAAAGATGGTTTCTTTAGTGTCAAGAGCAAAATGCTG                         GTTAATGTCACTGCTGATCACAGAATTGTATACGGTGCTGATCTGGCAGCA
genomic: CAGTGGTGGCTGATAAAGATGGTTTCTTTAGTGTCAAGAGCAAAATGCTGgttagttgcc ... atttttttagGTTAATGTCACTGCTGATCACAGAATTGTATACGGTGCTGATCTGGCAGCA
EST: gi|27920911|gb|CB096719.1|CB096719
EST:     CAGTGGTGGCTGATAAAGATGGTTTCTTTAGTGTCAAGAGCAAAATGCTG                         GTTAATGTCACGGCTGATCACAGAATTGTATACGGTGCTGATCTGGCAGCA
genomic: CAGTGGTGGCTGATAAAGATGGTTTCTTTAGTGTCAAGAGCAAAATGCTGgttagttgcc ... atttttttagGTTAATGTCACTGCTGATCACAGAATTGTATACGGTGCTGATCTGGCAGCA
EST: gi|86504491|gb|CI147124.1|CI147124
EST:     CAGTGGTGGCTGATAAAGATGGTTTCTTTAGTGTCAAGAGCAAAATGCTG                         GTTAATGTCACTGCTGATCACAGAATTGTATACGGTGCTGATCTGGCAGCA
genomic: CAGTGGTGGCTGATAAAGATGGTTTCTTTAGTGTCAAGAGCAAAATGCTGgttagttgcc ... atttttttagGTTAATGTCACTGCTGATCACAGAATTGTATACGGTGCTGATCTGGCAGCA
EST: gi|86497312|gb|CI139945.1|CI139945
EST:     CAGTGGTGGCTGATAAAGATGGTTTCTTTAGTGTCAAGAGCAAAATGCTG                         GTTAATGTCACTGCTGATCACAGAATTGTATACGGTGCTGATCTGGCAGCA
genomic: CAGTGGTGGCTGATAAAGATGGTTTCTTTAGTGTCAAGAGCAAAATGCTGgttagttgcc ... atttttttagGTTAATGTCACTGCTGATCACAGAATTGTATACGGTGCTGATCTGGCAGCA
EST: gi|88439555|gb|CI551789.1|CI551789
EST:     CAGTGGTGGCTGATAAAGATGGTTTCTTTAGTGTCAAGAGCAAAATGCTG                         GTTAATGTCACTGCTGATCACAGAATTGTATACGGTGCTGATCTGGCAGCA
genomic: CAGTGGTGGCTGATAAAGATGGTTTCTTTAGTGTCAAGAGCAAAATGCTGgttagttgcc ... atttttttagGTTAATGTCACTGCTGATCACAGAATTGTATACGGTGCTGATCTGGCAGCA
EST: gi|86501999|gb|CI144632.1|CI144632
EST:     CAGTGGTGGCTGATAAAGATGGTTTCTTTAGTGTCAAGAGCAAAATGCTG                         GTTAATGTCACTGCTGATCACAGAATTGTATACGGTGCTGATCTGGCAGCA
genomic: CAGTGGTGGCTGATAAAGATGGTTTCTTTAGTGTCAAGAGCAAAATGCTGgttagttgcc ... atttttttagGTTAATGTCACTGCTGATCACAGAATTGTATACGGTGCTGATCTGGCAGCA
EST: gi|86504362|gb|CI146995.1|CI146995
EST:     AGTGGTGGCTGATAAAGATGGTTTCTTTAGTGTCCAAGAGCACAATGCTG                         GTTAATGTCACTGCTGATCACAGAATTGTATACGGTGCTGATCTGGCAGCA
genomic: AGTGGTGGCTGATAAAGATGGTTTCTTTAGTGT-CAAGAGCAAAATGCTGgttagttgcc ... atttttttagGTTAATGTCACTGCTGATCACAGAATTGTATACGGTGCTGATCTGGCAGCA
EST: gi|86858948|gb|CI275150.1|CI275150
EST:     CAGTGGTGGCTGATAAAGATGGTTTCTTTAGTGTCAAGAGCAAAATGCTG                         GTTAATGTCACTGCTGATCACAGAATTGTATACGGTGCTGATCTGGCAGCA
genomic: CAGTGGTGGCTGATAAAGATGGTTTCTTTAGTGTCAAGAGCAAAATGCTGgttagttgcc ... atttttttagGTTAATGTCACTGCTGATCACAGAATTGTATACGGTGCTGATCTGGCAGCA
EST: gi|29663234|gb|CB659509.1|CB659509
EST:     CAGTGGTGGGTGATAAAGATGGTTTCTTTAGTGTCAAGAGCAAAATGCTG                         GTTAATGTCACTGCTGATCACAGAATTGTATACGGTGCTGATTTGGCAGCA
genomic: CAGTGGTGGCTGATAAAGATGGTTTCTTTAGTGTCAAGAGCAAAATGCTGgttagttgcc ... atttttttagGTTAATGTCACTGCTGATCACAGAATTGTATACGGTGCTGATCTGGCAGCA
EST: gi|86597928|gb|CI276714.1|CI276714
EST:     CAGTGGTGGCTGATAAAGATGGTTTCTTTAGTGTCAAGAGCAAAATGCTG                         GTTAATGTCACTGCTGATCACAGAATTGTATACGGTGCTGATCTGGCAGCA
genomic: CAGTGGTGGCTGATAAAGATGGTTTCTTTAGTGTCAAGAGCAAAATGCTGgttagttgcc ... atttttttagGTTAATGTCACTGCTGATCACAGAATTGTATACGGTGCTGATCTGGCAGCA
EST: gi|86499205|gb|CI141838.1|CI141838
EST:     CAGTGGTGGCTGATAAAGATGGTTTCTTTAGTGTCAAGAGCAAAATGCTG                         GTTAATGTCACTGCTGATCACAGAATTGTATACGGTGCTGATCTGGCAGCA
genomic: CAGTGGTGGCTGATAAAGATGGTTTCTTTAGTGTCAAGAGCAAAATGCTGgttagttgcc ... atttttttagGTTAATGTCACTGCTGATCACAGAATTGTATACGGTGCTGATCTGGCAGCA
EST: gi|86501092|gb|CI143725.1|CI143725
EST:     CAGTGGTGGCTGATAAAGATGGTTTCTTTAGTGTCAAGAGCAAAATGCTG                         GTTAATGTCACTGCTGATCACAGAATTGTATACGGTGCTGATCTGGCAGCA
genomic: CAGTGGTGGCTGATAAAGATGGTTTCTTTAGTGTCAAGAGCAAAATGCTGgttagttgcc ... atttttttagGTTAATGTCACTGCTGATCACAGAATTGTATACGGTGCTGATCTGGCAGCA
EST: gi|88518472|gb|CI446126.1|CI446126
EST:     CAGTGGTGGCTGATAAAGATGGTTTCTTTAGTGTCAAGAGCAAAATGCTG                         GTTAATGTCACTGCTGATCACAGAATTGTATACGGTGCTGATCTGGCAGCA
genomic: CAGTGGTGGCTGATAAAGATGGTTTCTTTAGTGTCAAGAGCAAAATGCTGgttagttgcc ... atttttttagGTTAATGTCACTGCTGATCACAGAATTGTATACGGTGCTGATCTGGCAGCA
EST: gi|88515702|gb|CI443356.1|CI443356
EST:     CAGTGGTGGCTGATAAAGATGGTTTCTTTAGTGTCAAGAGCAAAATNCTG                         GTTAATGTCACTGCTGATCACAGAATTGTATACGGTGCTGATCTGGCAGCA
genomic: CAGTGGTGGCTGATAAAGATGGTTTCTTTAGTGTCAAGAGCAAAATGCTGgttagttgcc ... atttttttagGTTAATGTCACTGCTGATCACAGAATTGTATACGGTGCTGATCTGGCAGCA
EST: gi|88224230|gb|CI224079.1|CI224079
EST:     CAGTGGTGGCTGATAAAGATGGTTTCTTTAGTGTCAAGAGCAAAATGCTG                         GTTAATGTCACTGCTGATCACAGAATTGTATACGGTGCTGATCTGGCAGCA
genomic: CAGTGGTGGCTGATAAAGATGGTTTCTTTAGTGTCAAGAGCAAAATGCTGgttagttgcc ... atttttttagGTTAATGTCACTGCTGATCACAGAATTGTATACGGTGCTGATCTGGCAGCA
EST: gi|86504817|gb|CI147450.1|CI147450
EST:     AGTGGTGGCTGATAAAGATGGTTTCTTTAGTGTCCAAGAGCAAAATGCTG                         GTTAATGTCACTGCTGATCACAGAATTGTATACGGTGCTGATCTGGCAGCA
genomic: AGTGGTGGCTGATAAAGATGGTTTCTTTAGTGT-CAAGAGCAAAATGCTGgttagttgcc ... atttttttagGTTAATGTCACTGCTGATCACAGAATTGTATACGGTGCTGATCTGGCAGCA
EST: gi|66912791|gb|CX099639.1|CX099639
EST:     CAGTGGTGGCTGATAAAGATGGTTTCTTTAGTGTCAAGAGCAAAATGCTG                         GTTAATGTCACTGCTGATCACAGAATTGTATACGGTGCTGATCTGGCAGCA
genomic: CAGTGGTGGCTGATAAAGATGGTTTCTTTAGTGTCAAGAGCAAAATGCTGgttagttgcc ... atttttttagGTTAATGTCACTGCTGATCACAGAATTGTATACGGTGCTGATCTGGCAGCA
EST: gi|86503803|gb|CI146436.1|CI146436
EST:     AGTGGTGGCTGATAAAGATGGTTTCTTTAGTGTCCAAGAGCAAAATGCTG                         GTTAATGTCACTGCTGATCACAGAATTGTATACGGTGCTGATCTGGCAGCA
genomic: AGTGGTGGCTGATAAAGATGGTTTCTTTAGTGT-CAAGAGCAAAATGCTGgttagttgcc ... atttttttagGTTAATGTCACTGCTGATCACAGAATTGTATACGGTGCTGATCTGGCAGCA
EST: gi|86493073|gb|CI135706.1|CI135706
EST:     CAGTGGTGGCTGATAAAGATGGTTTCTTTAGTGTCAAGAGCAAAATGCTG                         GTTAATGTCACTGCTGATCACAGAATTGTATACGGTGCTGATCTGGCAGCA
genomic: CAGTGGTGGCTGATAAAGATGGTTTCTTTAGTGTCAAGAGCAAAATGCTGgttagttgcc ... atttttttagGTTAATGTCACTGCTGATCACAGAATTGTATACGGTGCTGATCTGGCAGCA
EST: gi|88283592|gb|CI405038.1|CI405038
EST:     GTTTCTTTAGTGTCAAGAGCAAAATGCTG                         GTTAATGTCACTGCTGATCACAGAATTGTATACGGTGCTGATCTGGCAGCA
genomic: GTTTCTTTAGTGTCAAGAGCAAAATGCTGgttagttgcc ... atttttttagGTTAATGTCACTGCTGATCACAGAATTGTATACGGTGCTGATCTGGCAGCA
EST: gi|86501837|gb|CI144470.1|CI144470
EST:     CAGTGGTGGCTGATAAAGATGGTTTCTTTAGTGTCAAGAGCAAAATGCTG                         GTTAATGTCACTGCTGATCACAGAATTGTATACGGTGCTGATCTGGCAGCA
genomic: CAGTGGTGGCTGATAAAGATGGTTTCTTTAGTGTCAAGAGCAAAATGCTGgttagttgcc ... atttttttagGTTAATGTCACTGCTGATCACAGAATTGTATACGGTGCTGATCTGGCAGCA
EST: gi|86859001|gb|CI276951.1|CI276951
EST:     CAGTGGTGGCTGATAAAGATGGTTTCTTTAGTGTCAAGAGCAAAATGCTG                         GTTAATGTCACTGCTGATCACAGAATTGTATACGGTGCTGATCTGGCAGCA
genomic: CAGTGGTGGCTGATAAAGATGGTTTCTTTAGTGTCAAGAGCAAAATGCTGgttagttgcc ... atttttttagGTTAATGTCACTGCTGATCACAGAATTGTATACGGTGCTGATCTGGCAGCA

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 60 (upstream exon), 65 (downstream exon)
Score: 21

GGAGGCATAATGGCTGTCGGAGCCTCAAAACCTACAGTGGTGGCTGATAAAGATGGTTTCTTTAGTGTCAAGAGCAAAATGCTGgttagttgcc ... atttttttagGTTAATGTCACTGCTGATCACAGAATTGTATACGGTGCTGATCTGGCAGCATTCCTGCAAACTTTTGCAAAGATTATTGAGGATCCTGAGAGCTTAACTT




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Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GGAGGCATAATGGCTGTCGGAGCCTCAAAACCTACAGTGGTGGCTGATAAAGATGGTTTCTTTAGTGTCAAGAGCAAAATGCTGgttagttgcccttcacacatgcaatttttcagccaatactggaaattagtgattgttatattagtatgttgggaagtgcttctgtgctcctcaataaaaa

- - - - - - - - - - - - - - - - - -  TGGTGG
- - - - - - - - - - - - - - - - - - - - - GCTGAT
- - - - - - - - - - - - - - - - - - - - - - - -  AAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aataaaa