1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
TCCCAACAATCTTATGCCTTATGTTCAGCAAGTTGCTGTTGGCAGGAGGCCAGCTCTGACAATACTAGGAAATGATTATGCAACCAGAGATGGTACCGGGgtaatgcttttcacatgtatattcaatttgtcattatttgcgtctgtttaaatttgattaatccatgttagtacctttcaagattctgattctcatgtta...
species | Oryza sativa |
transcript | LOC_Os08g28730.1 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: ATGATTATGCAACCAGAGATGGTACCGGG GTCCGAGATTACATCCATGTGGTTGACCTTGCTGATGGACATATTGCGGCAEST: gi|29673347|gb|CB669622.1|CB669622
genomic: ATGATTATGCAACCAGAGATGGTACCGGGgtaatgcttt ... tgatttacagGTCCGAGATTACATCCATGTGGTTGACCTTGCTGATGGACATATTGCGGCA
EST: CAGCTCTGACAATACTAGGAAATGATTATGCAACCAGAGATGGTACCGGG GTCCGAGATTACATCCATGTGGTTGACCTTGCTGATGGACATATTGCGGCAEST: gi|163928869|gb|EG709747.1|EG709747
genomic: CAGCTCTGACAATACTAGGAAATGATTATGCAACCAGAGATGGTACCGGGgtaatgcttt ... tgatttacagGTCCGAGATTACATCCATGTGGTTGACCTTGCTGATGGACATATTGCGGCA
EST: CAGCTCTGACAATACTAGGAAATGATTATGCAACCAGAGATGGTACCGGG GTCCGAGATTACATCCATGTGGTTGACCTTGCTGATGGACATEST: gi|58686188|gb|CK074875.1|CK074875
genomic: CAGCTCTGACAATACTAGGAAATGATTATGCAACCAGAGATGGTACCGGGgtaatgcttt ... tgatttacagGTCCGAGATTACATCCATGTGGTTGACCTTGCTGATGGACAT
EST: CAGCTCTGACAATACTAGGAAATGATTATGCAACCAGAGATGGTACCGGG GTCCGAGATTACATCCATGTGGTTGACCTTGCTGATGGACATATTGCGGCAEST: gi|58606565|gb|CK034598.1|CK034598
genomic: CAGCTCTGACAATACTAGGAAATGATTATGCAACCAGAGATGGTACCGGGgtaatgcttt ... tgatttacagGTCCGAGATTACATCCATGTGGTTGACCTTGCTGATGGACATATTGCGGCA
EST: CAGCTCTGACAATACTAGGAAATGATTATGCAACCAGAGATGGTACCGGG GTCCGAGATTACATCCATGTGGTTGACCTTGCTGATGGACATATTGCGGCAEST: gi|58662148|gb|CK050828.1|CK050828
genomic: CAGCTCTGACAATACTAGGAAATGATTATGCAACCAGAGATGGTACCGGGgtaatgcttt ... tgatttacagGTCCGAGATTACATCCATGTGGTTGACCTTGCTGATGGACATATTGCGGCA
EST: CAGCTCTGACAATACTAGGAAATGATTATGCAACCAGAGATGGTACCGGG GTCCGAGATTACA
genomic: CAGCTCTGACAATACTAGGAAATGATTATGCAACCAGAGATGGTACCGGGgtaatgcttt ... tgatttacagGTCCGAGATTACA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TCCCAACAATCTTATGCCTTATGTTCAGCAAGTTGCTGTTGGCAGGAGGCCAGCTCTGACAATACTAGGAAATGATTATGCAACCAGAGATGGTACCGGGgtaatgcttttcacatgtatattcaatttgtcattatttgcgtctgtttaaatttgattaatccatgttagtacctttcaagattctgattctcatgtta
- - - - - - - - - - - - - - - - - - - - - - - - - CAGCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG