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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCAAGACCAACCATATATCAAGTTGTGAAGGAGATGATTGATAAGATGGGTTATGAGgtaaggttactagaaatagtctatagtagttgtgtttggttacaaataagtcaaattgtaccactcattcatttatttattccttccatcattgtgtttgattttggttccag

Basic information

species Oryza sativa
transcript LOC_Os08g26870.2
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os08g26870.4 (Oryza sativa), 5'ss of exon 5
lower sequence: GRMZM2G377595_T01 (Zea mays), 5'ss of exon 5
GCAAGACCAACCATATATCAAGTTGTGAAGGAGATGATTGATAAGATGGGTTATGAGgtaaggttactagaaatagtctatagtagttgtgtttggttacaaataagtcaaattgtaccactcattcatttatttattccttccatcattgtgtttgattttggttccag
||| || | ||||||||||||| ||| ||||| ||||||||||| ||||||||||||||||  ||  ||    ||  |  | ||||  |  | || ||||   |  |||||   | |    | |||||| |  ||   ||||| |||||  || | | |||||| | |||
GCACGAGCGACCATATATCAAGCTGTCAAGGAAATGATTGATAAAATGGGTTATGAGgtaatctttttacttgtaagcatttgtagcag-atatgcttac---ttggtcaaggagaa--gttaattcatattattgccccttctatcatgatggt-ggttttgggttcag

upper sequence: LOC_Os08g26870.4 (Oryza sativa), 5'ss of exon 5
lower sequence: GRMZM2G148892_T01 (Zea mays), 5'ss of exon 4
GCAAGACCAACCATATATCAAGTTGTGAAGGAGATGATTGATAAGATGGGTTATGAGgtaaggttactagaaatagtctatagtagttgtgtttggttacaaataagtcaaattgtaccactcattcatttatttattccttccatcattgtgtttgattttggttccag
||| || | ||||||||||||||||| ||||| ||||||||||| ||||||||||||||||  ||  ||    ||  |  | ||||  |  | || ||||   |  |||||   | |    | |||||| |  ||   ||||| |||||  || | | |||||| | |||
GCACGAGCGACCATATATCAAGTTGTTAAGGAAATGATTGATAAAATGGGTTATGAGgtaatatttttacttgtaagcatttgtagcag-atatgcttac---ttggtcaaggagaa--gttaattcatcttattgccccttctatcatgatggt-ggttttgggttcag

upper sequence: LOC_Os08g26870.4 (Oryza sativa), 5'ss of exon 5
lower sequence: GRMZM2G006468_T05 (Zea mays), 5'ss of exon 4
GCAAGACCAACCATATATCAAGTTGTGAAGGAGATGATTGATAAGATGGGTTATGAGgtaaggtta-ctagaaatagtctatagtagttgtgtttggttacaaataagtcaaattgtaccactcattcatttatttattccttccatcattgtgtttgattttggttccag
||| |||||||||||||||||||||| ||||| ||||||||||| ||||| ||||||||||  |||  | | ||   | | | | |||| || ||  ||  ||  |||   || |  ||   | |||||| |  |||| ||||  ||| |  || | | |||||| | |||
GCACGACCAACCATATATCAAGTTGTCAAGGAAATGATTGATAAAATGGGCTATGAGgtaatcttaattcgtaagcctttgttgcagttatgcttattt--aatcaaggagaagttaact--taattcatcttcttatcccttttatcttgatggt-ggttttgggttcag

upper sequence: LOC_Os08g26870.4 (Oryza sativa), 5'ss of exon 5
lower sequence: GRMZM2G006468_T01 (Zea mays), 5'ss of exon 2
-------------------------------------------GCAAGACCAACCATATATCAAGTTGTGAAGGAGATGATTGATAAGATGGGTTATGAGgtaaggtta-ctagaaatagtctatagtagttgtgtttggttacaaataagtcaaattgtaccactcattcatttatttattccttccatcattgtgtttgattttggttccag
                                           ||| |||||||||||||||||||||| ||||| ||||||||||| ||||| ||||||||||  |||  | | ||   | | | | |||| || ||  ||  ||  |||   || |  ||   | |||||| |  |||| ||||  ||| |  || | | |||||| | |||
CCATTCTGTTTCATGTAGTCTATATAACGCCTTTATGTTATAGGCACGACCAACCATATATCAAGTTGTCAAGGAAATGATTGATAAAATGGGCTATGAGgtaatcttaattcgtaagcctttgttgcagttatgcttattt--aatcaaggagaagttaact--taattcatcttcttatcccttttatcttgatggt-ggttttgggttcag

upper sequence: LOC_Os08g26870.4 (Oryza sativa), 5'ss of exon 5
lower sequence: GRMZM2G053531_T02 (Zea mays), 5'ss of exon 5
GCAAGACCAACCATATATCAAGTTGTGAAGGAGATGATTGATAAGATGGGTTATGAGgtaaggttactagaaatagtctatagtagttgtgtttggttacaaataagtcaaattgtaccactcattcatttatttattccttccatcattgtgtttgattttggttccag
||| |||| ||||||||||||||||| ||||| ||||||||||| ||||||||||||||||  ||  ||    ||  |  | ||||  |  | || ||||   |  |||||   | |    | |||||| |  ||   ||||| |||||  || | | |||||| | |||
GCACGACCGACCATATATCAAGTTGTCAAGGAAATGATTGATAAAATGGGTTATGAGgtaatctttttacttgtaagcatttgtagcag-atatgcttac---ttggtcaaggagaa--gttaattcatcttattgccccttctatcatgatggt-ggttttgggttcag

upper sequence: LOC_Os08g26870.4 (Oryza sativa), 5'ss of exon 5
lower sequence: GLYMA1784S00200.1 (Glycine max), 5'ss of exon 4
GCAAGACCAACCATATATCAAGTTGTGAAGGAGATGATTGATAAGATGGGTTATGAGgtaaggttactagaaatagtctatagtagttgtgtttggttacaaataagtcaaattgtaccactca--ttc----atttatttattccttccatcattgtgtttgattttggttccag
|| ||||| ||  | |||||||| ||||||||||||||||| ||||||||||| || ||||| || ||    ||  | |||| |  ||     |  ||         |    ||  | || |||  |||    ||  | |||    |   |||||  ||||| ||  |     |||
GCTAGACCTACTTTGTATCAAGTAGTGAAGGAGATGATTGACAAGATGGGTTACGAAgtaagatt-ctgtttatc-tttatactc-ttactcctaattgtgttgtgatatttttccatcattcaggttccacgatgaaattaagaatcaaatcatgttgtttcatgctt-ccacag

upper sequence: LOC_Os08g26870.4 (Oryza sativa), 5'ss of exon 5
lower sequence: GLYMA14G07830.1 (Glycine max), 5'ss of exon 5
GCAAGACCAACCATATATCAAGTTGTGAAGGAGATGATTGATAAGATGGGTTATGAGgtaaggttactagaaatagtcta-tagtagttgtgtttggttacaaataagtcaaattgtaccactcattcatttatttattccttccatcattgtgtttgattttggttccag--
|| ||||| ||  | |||||||| ||||||||||||||||| ||||||||||| || ||||  ||      |    | || |  || |  |  |||  |    ||   || |    |     ||    ||  | |||    |   |||||  |||||     || |||||   
GCTAGACCTACTTTGTATCAAGTAGTGAAGGAGATGATTGACAAGATGGGTTACGAAgtaaaattctgtttatctttatactcttactcctaattgtattgtcatctttccatcattcaggttccacgatgaaattaagaatcaaatcatgttgttt---cctgcttccacag

upper sequence: LOC_Os08g26870.4 (Oryza sativa), 5'ss of exon 5
lower sequence: AT1G75380.3 (Arabidopsis thaliana), 5'ss of exon 5
GCAAGACCAACCATATATCAAGTTGTGAAGGAGATGATTGATAAGATGGGTTATGAGgtaaggttactagaaatagtctatagtagttgtgtttggttacaaataagtc----aaattgtaccactcattcatttatttattccttccatcattgtgtttgattttggttccag
|||||||||||||| |||||||| |||||||| ||| | || ||||||||||| || ||| | ||  | |    ||| | |  |  || | |||   ||    |   ||    | |||||    |      ||||  | |    ||| |                         
GCAAGACCAACCATGTATCAAGTGGTGAAGGAAATGGTGGACAAGATGGGTTACGAAgtatgtttcgtggtttcagtttctgctc-ttttatttaaatatccttgtctcgtgaagattgtgtttcatgaaaattttctgaactattctacag----------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|29659232|gb|CB655507.1|CB655507
EST:     CAACCATATATCAAGTTGTGAAGGAGATGATTGATAAGATGGGTTATGAG                         GTAAAACTGGTTCGGATAAATAAAAGAATTCAAGAAGCATACTGTGCTGAA
genomic: CAACCATATATCAAGTTGTGAAGGAGATGATTGATAAGATGGGTTATGAGgtaaggttac ... ttggttccagGTAAAACTGGTTCGGATAAATAAAAGAATTCAAGAAGCATACTGTGCTGAA
EST: gi|29660675|gb|CB656950.1|CB656950
EST:     CAACCATATATCAAGTTGTGAAGGAGATGATTGATAAGATGGGTTATGAG                         GTAAAACTGGTTCGGATAAATAAAAGAATTCAAGAAGCATACTGTGCTGAA
genomic: CAACCATATATCAAGTTGTGAAGGAGATGATTGATAAGATGGGTTATGAGgtaaggttac ... ttggttccagGTAAAACTGGTTCGGATAAATAAAAGAATTCAAGAAGCATACTGTGCTGAA
EST: gi|29659550|gb|CB655825.1|CB655825
EST:     CAACCATATATCAAGTTGTGAAGGAGATGATTGATAAGATGGGTTATGAG                         GTAAAACTGGTTCGGATAAATAAAAGAATTCAAGAAGCATACTGTGCTGAA
genomic: CAACCATATATCAAGTTGTGAAGGAGATGATTGATAAGATGGGTTATGAGgtaaggttac ... ttggttccagGTAAAACTGGTTCGGATAAATAAAAGAATTCAAGAAGCATACTGTGCTGAA
EST: gi|27920437|gb|CB096245.1|CB096245
EST:     CAACCATATATCAAGTTGTGAAGGAGATGATTGATAAGATGGGTTATGAG                         GTAAAACTGGTTCGGATAAATAAAAGAATTCAAGAAGCATACTGTGCTGAA
genomic: CAACCATATATCAAGTTGTGAAGGAGATGATTGATAAGATGGGTTATGAGgtaaggttac ... ttggttccagGTAAAACTGGTTCGGATAAATAAAAGAATTCAAGAAGCATACTGTGCTGAA
EST: gi|109974602|gb|DT806998.1|DT806998
EST:     CAACCATATATCAAGTTGTGAAGGAGATGATTGATAAGATGGGTTATGAG                         GTAAAACTGGTTCGGATAAATAAAAGAATTCAAGAAGCATACTGTGCTGAA
genomic: CAACCATATATCAAGTTGTGAAGGAGATGATTGATAAGATGGGTTATGAGgtaaggttac ... ttggttccagGTAAAACTGGTTCGGATAAATAAAAGAATTCAAGAAGCATACTGTGCTGAA
EST: gi|29629367|gb|CB634378.1|CB634378
EST:     CAACCATATATCAAGTTGTGAAGGAGATGATTGATAAGATGGGTTATGAG                         GTAAAACTGGTTCGGATAAATAAAAGAATTCAAGAAGCATACTGTGTTGAA
genomic: CAACCATATATCAAGTTGTGAAGGAGATGATTGATAAGATGGGTTATGAGgtaaggttac ... ttggttccagGTAAAACTGGTTCGGATAAATAAAAGAATTCAAGAAGCATACTGTGCTGAA
EST: gi|88831948|gb|CI014507.1|CI014507
EST:     TAAGATGGGTTATGAG                         GTAAAACTGGTTCGGATAAATAAAAGAATTCAAGAAGCATACTGTGCTGAA
genomic: TAAGATGGGTTATGAGgtaaggttac ... ttggttccagGTAAAACTGGTTCGGATAAATAAAAGAATTCAAGAAGCATACTGTGCTGAA
EST: gi|29663843|gb|CB660118.1|CB660118
EST:     CAACCATATATCAAGTTGTGAAGGAGATGATTGATAAGATGGGTTATGAG                         GTAAAACTGGTTCGGATAAATAAAAGAATTCAAGAAGCATACTGTGCTGAA
genomic: CAACCATATATCAAGTTGTGAAGGAGATGATTGATAAGATGGGTTATGAGgtaaggttac ... ttggttccagGTAAAACTGGTTCGGATAAATAAAAGAATTCAAGAAGCATACTGTGCTGAA
EST: gi|3767979|gb|AU032006.1|AU032006
EST:     CAACCATATATCAAGTTGTGAAGGAGATGATTGATAAGATGGGTTATGAG                         GTAAAACTGGTTCGGATAAATAAAAGAATTCAAGAAGCATACTGTGCTGAA
genomic: CAACCATATATCAAGTTGTGAAGGAGATGATTGATAAGATGGGTTATGAGgtaaggttac ... ttggttccagGTAAAACTGGTTCGGATAAATAAAAGAATTCAAGAAGCATACTGTGCTGAA
EST: gi|29659488|gb|CB655763.1|CB655763
EST:     CAACCATATATCAAGTTGTGAAGGAGATGATTGATAAGATGGGTTATGAG                         GTAAAACTGGTTCGGATAAATAAAAGAATTCAAGAAGCATACTGTGCTGAA
genomic: CAACCATATATCAAGTTGTGAAGGAGATGATTGATAAGATGGGTTATGAGgtaaggttac ... ttggttccagGTAAAACTGGTTCGGATAAATAAAAGAATTCAAGAAGCATACTGTGCTGAA
EST: gi|29670738|gb|CB667013.1|CB667013
EST:     CAACCATATATCAAGTTGTGAAGGAGATGATTGATAAGATGGGTTATGAG                         GTAAAACTGGTTCGGATAAATAAAAGAATTCAAGAAGCATACTGTGCTGAA
genomic: CAACCATATATCAAGTTGTGAAGGAGATGATTGATAAGATGGGTTATGAGgtaaggttac ... ttggttccagGTAAAACTGGTTCGGATAAATAAAAGAATTCAAGAAGCATACTGTGCTGAA
EST: gi|29675966|gb|CB672241.1|CB672241
EST:     CAACCATATATCAAGTTGTGAAGGAGATGATTGATAAGATGGGTTATGAG                         GTAAAACTGGTTCGGATAAATAAAAGAATTCAAGAAGCATACTGTGCTGAA
genomic: CAACCATATATCAAGTTGTGAAGGAGATGATTGATAAGATGGGTTATGAGgtaaggttac ... ttggttccagGTAAAACTGGTTCGGATAAATAAAAGAATTCAAGAAGCATACTGTGCTGAA
EST: gi|29671385|gb|CB667660.1|CB667660
EST:     CAACCATATATCAAGTTGTGAAGGAGATGATTGATAAGATGGGTTATGAG                         GTAAAACTGGTTCGGATAAATAAAAGAATTCAAGAAGCATACTGTGCTGAA
genomic: CAACCATATATCAAGTTGTGAAGGAGATGATTGATAAGATGGGTTATGAGgtaaggttac ... ttggttccagGTAAAACTGGTTCGGATAAATAAAAGAATTCAAGAAGCATACTGTGCTGAA
EST: gi|218504708|gb|FG953263.1|FG953263
EST:     CAACCATATATCAAGTTGTGAAGGAGATGATTGATAAGATGGGTTATGAG                         GTAAAACTGGTTCGGATAAATAAAAGAATTCAAGAAGCATACTGTGCTGAA
genomic: CAACCATATATCAAGTTGTGAAGGAGATGATTGATAAGATGGGTTATGAGgtaaggttac ... ttggttccagGTAAAACTGGTTCGGATAAATAAAAGAATTCAAGAAGCATACTGTGCTGAA
EST: gi|84117164|gb|CD150931.1|CD150931
EST:     CAACCATATATCAAGTTGTGAAGGAGATGATTGATAAGATGGGTTATGAG                         GTAAAACTGGTTCGGATAAATAAAAGAATTCAAGAAGCATACTGTGCTGAA
genomic: CAACCATATATCAAGTTGTGAAGGAGATGATTGATAAGATGGGTTATGAGgtaaggttac ... ttggttccagGTAAAACTGGTTCGGATAAATAAAAGAATTCAAGAAGCATACTGTGCTGAA
EST: gi|29659844|gb|CB656119.1|CB656119
EST:     CAACCATATATCAAGTTGTGAAGGAGATGATTGATAAGATGGGTTATGAG                         GTAAAACTGGTTCGGATAAATAAAAGAATTCAAGAAGCATACTGTGCTGAA
genomic: CAACCATATATCAAGTTGTGAAGGAGATGATTGATAAGATGGGTTATGAGgtaaggttac ... ttggttccagGTAAAACTGGTTCGGATAAATAAAAGAATTCAAGAAGCATACTGTGCTGAA
EST: gi|29669212|gb|CB665487.1|CB665487
EST:     CAACCATATATCAAGTTGTGAAGGAGATGATTGATAAGATGGGTTATGAG                         GTAAAACTGGTTCGGATAAATAAAAGAATTCAAGAAGCATACTGTGCTGAA
genomic: CAACCATATATCAAGTTGTGAAGGAGATGATTGATAAGATGGGTTATGAGgtaaggttac ... ttggttccagGTAAAACTGGTTCGGATAAATAAAAGAATTCAAGAAGCATACTGTGCTGAA
EST: gi|58687907|gb|CK076594.1|CK076594
EST:     CAACCATATATCAAGTTGTGAAGGAGATGATTGATAAGATGGGTTATGAG                         GTAAAACTGGTTCGGATAAATAAAAGAATTCAAGAAGCATACTGTGCTGAA
genomic: CAACCATATATCAAGTTGTGAAGGAGATGATTGATAAGATGGGTTATGAGgtaaggttac ... ttggttccagGTAAAACTGGTTCGGATAAATAAAAGAATTCAAGAAGCATACTGTGCTGAA
EST: gi|29664873|gb|CB661148.1|CB661148
EST:     CAACCATATATCAAGTTGTGAAGGAGATGATTGATAAGATGGGTTATGAG                         GTAAAACTGGTTCGGATAAATAAAAGAATTCAAGAAGCATACTGTGCTGAA
genomic: CAACCATATATCAAGTTGTGAAGGAGATGATTGATAAGATGGGTTATGAGgtaaggttac ... ttggttccagGTAAAACTGGTTCGGATAAATAAAAGAATTCAAGAAGCATACTGTGCTGAA
EST: gi|218495687|gb|FG969804.1|FG969804
EST:     CAACCATATATCACGTTGTGAAGGAGATGATTGATAAGATGGGTTATGAG                         GTAAAACTGGTTCGGATAAATAAAAGAATTCAAGAAGCATACTGTGCTGAA
genomic: CAACCATATATCAAGTTGTGAAGGAGATGATTGATAAGATGGGTTATGAGgtaaggttac ... ttggttccagGTAAAACTGGTTCGGATAAATAAAAGAATTCAAGAAGCATACTGTGCTGAA
EST: gi|29657113|gb|CB653388.1|CB653388
EST:     CAACCATATATCAAGTTGTGAAGGAGATGATTGATAAGATGGGTTATGAG                         GTAAAACTGGTTCGGATAAATAAAAGAATTCAAGAAGCATACTGTGCTGAA
genomic: CAACCATATATCAAGTTGTGAAGGAGATGATTGATAAGATGGGTTATGAGgtaaggttac ... ttggttccagGTAAAACTGGTTCGGATAAATAAAAGAATTCAAGAAGCATACTGTGCTGAA
EST: gi|29678163|gb|CB674438.1|CB674438
EST:     CAACCATATATCAAGTTGTGAAGGAGATGATTGATAAGATGGGTTATGAG                         GTAAAACTGGTTCGGATAAATAAAAGAATTCAAGAAGCATACTGTGCTGAA
genomic: CAACCATATATCAAGTTGTGAAGGAGATGATTGATAAGATGGGTTATGAGgtaaggttac ... ttggttccagGTAAAACTGGTTCGGATAAATAAAAGAATTCAAGAAGCATACTGTGCTGAA
EST: gi|22306513|gb|BQ907735.1|BQ907735
EST:     TATATCAAAGTTGGTGAAGGAGATGGATTGATAAGATTGGGTTATGAG                         GTAAAACTGGTTCGGATAAATAAANAGAATTCAAGAAGCATACTGTGGCTG
genomic: TATATC-AAGTT-GTGAAGGAGAT-GATTGATAAGA-TGGGTTATGAGgtaaggttac ... ttggttccagGTAAAACTGGTTCGGATAAATAAA-AGAATTCAAGAAGCATACTGT-GCTG
EST: gi|29658491|gb|CB654766.1|CB654766
EST:     CAACCATATATCAAGTTGTGAAGGAGATGATTGATAAGATGGGTTATGAG                         GTAAAACTGGTTCGGATAAATAAAAGAATTCAAGAAGCATACTGTGCTGAA
genomic: CAACCATATATCAAGTTGTGAAGGAGATGATTGATAAGATGGGTTATGAGgtaaggttac ... ttggttccagGTAAAACTGGTTCGGATAAATAAAAGAATTCAAGAAGCATACTGTGCTGAA
EST: gi|58692668|gb|CK081355.1|CK081355
EST:     CAACCATATATCAAGTTGTGAAGGAGATGATTGATAAGATGGGTTATGAG                         GTAAAACTGGTTCGGATAAATAAAAGAATTCAAGAAGCATACTGTGCTGAA
genomic: CAACCATATATCAAGTTGTGAAGGAGATGATTGATAAGATGGGTTATGAGgtaaggttac ... ttggttccagGTAAAACTGGTTCGGATAAATAAAAGAATTCAAGAAGCATACTGTGCTGAA
EST: gi|29629366|gb|CB634377.1|CB634377
EST:     CAACCATATATCAAGTTGTGAAGGAGATGATTGATAAGATGGGTTATGAG                         GTAAAACTGGTTCGGATAAATAAAAGAATTCAAGAAGCATACTGTGCTGAA
genomic: CAACCATATATCAAGTTGTGAAGGAGATGATTGATAAGATGGGTTATGAGgtaaggttac ... ttggttccagGTAAAACTGGTTCGGATAAATAAAAGAATTCAAGAAGCATACTGTGCTGAA
EST: gi|29668681|gb|CB664956.1|CB664956
EST:     CAACCATATATCAAGTTGTGAAGGAGATGATTGATAAGATGGGTTATGAG                         GTAAAACTGGTTCGGATAAATAAAAGAATTCAAGAAGCATACTGTGCTGAA
genomic: CAACCATATATCAAGTTGTGAAGGAGATGATTGATAAGATGGGTTATGAGgtaaggttac ... ttggttccagGTAAAACTGGTTCGGATAAATAAAAGAATTCAAGAAGCATACTGTGCTGAA
EST: gi|29660157|gb|CB656432.1|CB656432
EST:     CAACCATATATCAAGTTGTGAAGGAGATGATTGATAAGATGGGTTATGAG                         GTAAAACTGGTTCGGATAAATAAAAGAATTCAAGAAGCATACTGTGCTGAA
genomic: CAACCATATATCAAGTTGTGAAGGAGATGATTGATAAGATGGGTTATGAGgtaaggttac ... ttggttccagGTAAAACTGGTTCGGATAAATAAAAGAATTCAAGAAGCATACTGTGCTGAA
EST: gi|29669928|gb|CB666203.1|CB666203
EST:     CAACCATATATCAAGTTGTGAAGGAGATGATTGATAAGATGGGTTATGAG                         GTAAAACTGGTTCGGATAAATAAAAGAATTCAAGAAGCATACTGTGCTGAA
genomic: CAACCATATATCAAGTTGTGAAGGAGATGATTGATAAGATGGGTTATGAGgtaaggttac ... ttggttccagGTAAAACTGGTTCGGATAAATAAAAGAATTCAAGAAGCATACTGTGCTGAA
EST: gi|29672180|gb|CB668455.1|CB668455
EST:     CAACCATATATCAAGTTGTGAAGGAGATGATTGATAAGATGGGTTATGAG                         GTAAAACTGGTTCGGATAAATAAAAGAATTCAAGAAGCATACTGTGCTGAA
genomic: CAACCATATATCAAGTTGTGAAGGAGATGATTGATAAGATGGGTTATGAGgtaaggttac ... ttggttccagGTAAAACTGGTTCGGATAAATAAAAGAATTCAAGAAGCATACTGTGCTGAA
EST: gi|33683462|gb|CF311701.1|CF311701
EST:     CAACCATATATCAAGTTGTGAAGGAGATGATTGATAAGATGGGTTATGGG                         GTAAAACTGGTTCGGATAAATAAAAGAATTCAAGAAGCATACTGTGCTGAA
genomic: CAACCATATATCAAGTTGTGAAGGAGATGATTGATAAGATGGGTTATGAGgtaaggttac ... ttggttccagGTAAAACTGGTTCGGATAAATAAAAGAATTCAAGAAGCATACTGTGCTGAA
EST: gi|29657533|gb|CB653808.1|CB653808
EST:     CAACCATATATCAAGTTGTGAAGGAGATGATTGATAAGATGGGTTATGAG                         GTAAAACTGGTTCGGATAAATAAAAGAATTCAAGAAGCATACTGTGCTGAA
genomic: CAACCATATATCAAGTTGTGAAGGAGATGATTGATAAGATGGGTTATGAGgtaaggttac ... ttggttccagGTAAAACTGGTTCGGATAAATAAAAGAATTCAAGAAGCATACTGTGCTGAA
EST: gi|58605333|gb|CK033366.1|CK033366
EST:     CAACCATATATCAAGTTGTGAAGGAGATGATTGATAAGATGGGTTATGAG                         GTAAAACTGGTTCGGATAAATAAAAGAATTCAAGAAGCATACTGTGCTGAA
genomic: CAACCATATATCAAGTTGTGAAGGAGATGATTGATAAGATGGGTTATGAGgtaaggttac ... ttggttccagGTAAAACTGGTTCGGATAAATAAAAGAATTCAAGAAGCATACTGTGCTGAA
EST: gi|29659233|gb|CB655508.1|CB655508
EST:     CAACCATATATCAAGTTGTGAAGGAGATGATTGATAAGATGGGTTATGAG                         GTAAAACTGGTTCGGATAAATAAAAGAATTCAAGAAGCATACTGTGCTGAA
genomic: CAACCATATATCAAGTTGTGAAGGAGATGATTGATAAGATGGGTTATGAGgtaaggttac ... ttggttccagGTAAAACTGGTTCGGATAAATAAAAGAATTCAAGAAGCATACTGTGCTGAA

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GCAAGACCAACCATATATCAAGTTGTGAAGGAGATGATTGATAAGATGGGTTATGAGgtaaggttactagaaatagtctatagtagttgtgtttggttacaaataagtcaaattgtaccactcattcatttatttattccttccatcattgtgtttgattttggttccag

- - - - - - - - - - - - -  AAGGAG
- - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - -  GGAGAT
- - - - - - - - - - - - - - - GAGATG
- - - - - - - - - - - - - - - - - - - - - AAGATG