1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
ATACATATCACCTGCCTTGATTTCTGTTTGCTCTCGGCCTTCTCACCATTTTGGGTCTACAACGACTTGACAGCAAGGCGATGgtacggacacttgccctgatactcactttgtgtagagaactgtcatgaatgacatcgtaccttacctaatacgaaaataccaaacacatgcattggatgacctgggtgaattattatttggctgacag
species | Oryza sativa |
transcript | LOC_Os08g25700.1 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: CTTGACAGCAAGGCGATG GAAAAATGGCTCTTGGCTTCTGCCCTTGGCACTTATCCCTTTTGTGGGACCEST: gi|3768684|gb|AU032711.1|AU032711
genomic: CTTGACAGCAAGGCGATGgtacggacac ... tggctgacagGAAAAATGGCTCTTGGCTTCTGCCCTTGGCACTTATCCCTTTTGTGGGACC
EST: TCGGCCTTCTCACCATTTTGGGTCTACAACGACTNGACAGCAAGGCGATG GAAAAATGGCTCTTGGCTTCTGCCCTTGGCACTTATCCCTTTTGTGGGNCCEST: gi|27547026|gb|CA767319.2|CA767319
genomic: TCGGCCTTCTCACCATTTTGGGTCTACAACGACTTGACAGCAAGGCGATGgtacggacac ... tggctgacagGAAAAATGGCTCTTGGCTTCTGCCCTTGGCACTTATCCCTTTTGTGGGACC
EST: TCGGCCTTCTCACCATTTTGGGTCTACAACGACTTGACAGCAAGGCGATG GAAAAATGGCTCTTGGCTTCTGCCCTTGGCACTTATCCCTTTTGTGGGACC
genomic: TCGGCCTTCTCACCATTTTGGGTCTACAACGACTTGACAGCAAGGCGATGgtacggacac ... tggctgacagGAAAAATGGCTCTTGGCTTCTGCCCTTGGCACTTATCCCTTTTGTGGGACC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ATACATATCACCTGCCTTGATTTCTGTTTGCTCTCGGCCTTCTCACCATTTTGGGTCTACAACGACTTGACAGCAAGGCGATGgtacggacacttgccctgatactcactttgtgtagagaactgtcatgaatgacatcgtaccttacctaatacgaaaataccaaacacatgcattggatgacctgggtgaattattatttggctgacag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG