1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
GCTACTTCTGAAAGCAGCAAGTGACTATGGGGCATTGACAGCATCTGTAGGTGATTTCCAGTGGAGCCAAAACTTCAGAGAGTCACCTGCTGTATGGGGGgtaagttgaaaaatatatttctaaatactacgttagtgtccaattgttcactataaattcattttctattaaacaccttccactttggatgcaagtattt...
species | Oryza sativa |
transcript | LOC_Os08g10410.1 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: TGATTTCCAGTGGA-CCAAAAACTTCAGAGAGTCACCTGCTGTATGGGGG G-AATGCTTCGACCGATNCCCT-NTGCGCTTGCTTCTTGCACGCGCTTCTTEST: gi|58684888|gb|CK073575.1|CK073575
genomic: TGATTTCCAGTGGAGCC-AAAACTTCAGAGAGTCACCTGCTGTATGGGGGgtaagttgaa ... cttgatgaagGAAATGCTTCGACCGAT-ACCTGCTGCGCTTGCTTCTTGCACGCGCTTCTT
EST: GGAGCCCAAACTTCAGAGAGTCACCTGCTGTATGGGGG GAAATGCTTCGACCGATACCTGCTGCGCTTGCTTCTTGCACGCGCTTCTTTEST: gi|218479983|gb|FG957518.1|FG957518
genomic: GGAGCCAAAACTTCAGAGAGTCACCTGCTGTATGGGGGgtaagttgaa ... cttgatgaagGAAATGCTTCGACCGATACCTGCTGCGCTTGCTTCTTGCACGCGCTTCTTT
EST: GTGATTTCCAGTGGAGCCAAAACTTCAGAGAGTCACCTGCTGTATGGGGG GAAATGCTTCGACCGATACCTGCTGCGCTTGCTTCTTGCACGCGCTTCTTTEST: gi|86499506|gb|CI142139.1|CI142139
genomic: GTGATTTCCAGTGGAGCCAAAACTTCAGAGAGTCACCTGCTGTATGGGGGgtaagttgaa ... cttgatgaagGAAATGCTTCGACCGATACCTGCTGCGCTTGCTTCTTGCACGCGCTTCTTT
EST: GTGATTTCCAGTGGAGCCAAAACTTCAGAGAGTCACCTGCTGTAT-GGGG GAAATGCTTCGACCGATACCTGCTGCGCTTGCTTCTTGCACGCGCTTCTTT
genomic: GTGATTTCCAGTGGAGCCAAAACTTCAGAGAGTCACCTGCTGTATGGGGGgtaagttgaa ... cttgatgaagGAAATGCTTCGACCGATACCTGCTGCGCTTGCTTCTTGCACGCGCTTCTTT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GCTACTTCTGAAAGCAGCAAGTGACTATGGGGCATTGACAGCATCTGTAGGTGATTTCCAGTGGAGCCAAAACTTCAGAGAGTCACCTGCTGTATGGGGGgtaagttgaaaaatatatttctaaatactacgttagtgtccaattgttcactataaattcattttctattaaacaccttccactttggatgcaagtattt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaaaata
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -caccttcc