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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGTGATTGTTTCGTCAATCATTATCTTCCACACACCTGTCCGCCCTGTCAATGCACTAGGAGCTGCCATTGCCATCCTTGGCACATTCCTGTATTCTCAGgtaaattcttgctttgatattttactttagccgtgcttgccctgtgtatacttcaaacaaactttcttttccctgcacgagaaggatgacattttgtata...

Basic information

species Oryza sativa
transcript LOC_Os08g08840.2
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os08g08840.2 (Oryza sativa), 5'ss of exon 5
lower sequence: GRMZM2G431314_T01 (Zea mays), 5'ss of exon 5
TGTGATTGTTTCGTCAATCATTATCTTCCACACACCTGTCCGCCCTGTCAATGCACTAGGAGCTGCCATTGCCATCCTTGGCACATTCCTGTATTCTCAGgtaaattc-ttgctttgatattttactttagccgtgcttgccctgtgtatacttcaaacaaactttcttttccctgcacgagaaggatgacattttgtata
 ||||||||||| || || |||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||| ||   | |||  ||  ||   | |    ||||||  ||| | ||||||  ||||||    | | |||    |  | ||||||          ||| 
AGTGATTGTTTCATCTATAATTATCTTCCACACGCCTGTCCGCCCTGTCAATGCACTGGGAGCTGCCATTGCCATCCTTGGCACATTCCTGTACTCTCAGgtaacttggctacttcaattcttccatgtgtttgtgcttttcctctatatactg-aaacaattactttcttctgaactagggaaggaaattggaacctatg

upper sequence: LOC_Os08g08840.2 (Oryza sativa), 5'ss of exon 5
lower sequence: GRMZM2G180720_T02 (Zea mays), 5'ss of exon 5
TGTGATTGTTTCGTCAATCATTATCTTCCACACACCTGTCCGCCCTGTCAATGCACTAGGAGCTGCCATTGCCATCCTTGGCACATTCCTGTATTCTCAGgtaaattc-ttgctttgatattttactttagccgtgcttgccctgtgtatacttcaaacaaactttcttttccctgcacgagaaggatgacattttgtata
 ||||||||||| |||||||||||||||||||| ||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||| ||   |||||   | ||||  | | |  | ||||  ||| | ||||||  |||| | |  | | |||       | || | |  |     | ||| 
AGTGATTGTTTCATCAATCATTATCTTCCACACTCCTGTCCGCGCTGTCAATGCACTGGGAGCTGCCATTGCCATCCTTGGCACATTCCTGTACTCTCAGgtaacttggctgcttcagttttttcatgtggttgggcttttcctctatatactg-aaacgatcactttcttctgaattggggaggcaaaatggaatttatc

upper sequence: LOC_Os08g08840.2 (Oryza sativa), 5'ss of exon 5
lower sequence: GLYMA13G27680.1 (Glycine max), 5'ss of exon 4
TGTGATTGTTTCGTCAATCATTATCTTCCACACACCTGTCCGCCCTGTCAATGCACTAGGAGCTGCCATTGCCATCCTTGGCACATTCCTGTATTCTCAGgtaaattcttgctttgatattttactttagccgtgcttgccctgtgtatacttcaaacaaactttcttttccctgcacgagaaggatgacattttgtata-----------
 || |||||||| || ||| ||||||| ||||| ||||| |  ||  ||||||| || || ||||||||||| || |||||||| ||||| ||||| |||||  |||||    |      | ||  ||  |  || ||      | | |||| | |   ||   |   |      |   |||   |  |   |||||  |           
GGTCATTGTTTCTTCCATCCTTATCTTTCACACGCCTGTTCAGCCCATCAATGCTCTTGGTGCTGCCATTGCAATTCTTGGCACCTTCCTCTATTCACAGgtgcattctcctctc---cctctaaattgactttgttt------tttgtactcccag--aatcctaagtgagaatcctaagagacaacatgctttgtgcactgacattatt

upper sequence: LOC_Os08g08840.2 (Oryza sativa), 5'ss of exon 5
lower sequence: GLYMA17G01890.1 (Glycine max), 5'ss of exon 4
TGTGATTGTTTCGTCAATCATTATCTTCCACACACCTGTCCGCCCTGTCAATGCACTAGGAGCTGCCATTGCCATCCTTGGCACATTCCTGTATTCTCAGgtaaattcttgctt-tgatattttactttagccgtgcttgccctgtgtatactt-caaacaaactttcttttccctgcacgag-aaggatgacattttgtata
 || ||||| || || ||| ||||||||||||||||  | |  || |||||||| || |||||||||||||| || ||||| || ||||| ||||| |||||| | | | | || |  |||| |   |  |            |      | |    || ||| |||| | || ||  || ||  |  |||  | |   |   
GGTAATTGTCTCTTCTATCCTTATCTTCCACACACCAATTCAGCCCGTCAATGCCCTTGGAGCTGCCATTGCAATTCTTGGTACCTTCCTTTATTCACAGgtacaatttcgtttcttttattatctgtctgtttgagacaaattaaaagcagtgattaagaaattttcatatctctcaacaagcgaaaatggaaatcact---

upper sequence: LOC_Os08g08840.2 (Oryza sativa), 5'ss of exon 5
lower sequence: GLYMA18G12080.1 (Glycine max), 5'ss of exon 5
-TGTGATTGTTTCGTCAATCATTATCTTCCACACACCTGTCCGCCCTGTCAATGCACTAGGAGCTGCCATTGCCATCCTTGGCACATTCCTGTATTCTCAGgtaaattct----tgctttgatattttactttagccgtgcttgcc-ctgtgtata---cttcaaacaaactttctt-ttccctgc-acgagaaggatgacattttgtata
 ||| ||||| || || || ||||||||||||||||| || |  ||  ||||||| || || ||||||||||| |||||||| || ||| ||||||| ||||||  ||||    | | ||  | ||||| |||     ||  |  |  ||  |||    |||    ||  |  | || ||  |||| |  ||||  |||            
CTGTCATTGTGTCTTCCATTATTATCTTCCACACACCAGTTCAACCCATCAATGCTCTTGGTGCTGCCATTGCTATCCTTGGAACCTTCTTGTATTCACAggtattttctattattcattttttttttaatttttttatgtatatcattgcttattgatcttttggcaggccatattatttactgctaaaagaaaaatgc-----------

upper sequence: LOC_Os08g08840.2 (Oryza sativa), 5'ss of exon 5
lower sequence: AT5G54800.1 (Arabidopsis thaliana), 5'ss of exon 4
TGTGATTGTTTCGTCAATCATTATCTTCCACACACCTGTCCGCCCTGTCAATGCACTAGGAGCTGCCATTGCCATCCTTGGCACATTCCTGTATTCTCAGgtaaat----tcttgctttgat-attttactttagccgtgcttgccctgtgt-atacttcaaacaaactttct---tttccctgcacgagaaggatgacattttgtata
 || ||||| || || ||||||||||||| ||| || ||||  || |||||||| || ||||| |||||||| |||||||| || ||| ||||||| ||||||||      ||| | ||||  |   |||  |     | | |  | | | | |||  | |||      ||||   |  |    |||    | ||||| |         
CGTCATTGTCTCCTCCATCATTATCTTCCGCACTCCAGTCCAGCCCGTCAATGCTCTTGGAGCAGCCATTGCTATCCTTGGAACCTTCTTGTATTCCCAGgtaaacataaccttaccttgaccaaaatacccttattatccatatcatatatgataaataaaaagcgtcttctgcatcacttcacacccacatgatgaga---------

upper sequence: LOC_Os08g08840.2 (Oryza sativa), 5'ss of exon 5
lower sequence: Vv19s0177g00300.t01 (Vitis vinifera), 5'ss of exon 4
TGTGATTGTTTCGTCAATCATTATCTTCCACACACCTGTCCGCCCTGTCAATGCACTAGGAGCTGCCATTGCCATCCTTGGCACATTCCTGTATTCTCAGgtaaattcttgctttgatattttactttagccgtgcttgccctgtgtatacttcaaacaaactttcttttccctgcacgagaaggatgacattttgtata-
||| || || || |||||||| |||||||||||||| ||||  ||  ||||||| || ||||||||||| || |||||||| || ||| ||||||||||||||  | ||   ||   |   | | || ||    | ||   | | |    ||  ||| | |  |   | |      |  | |||||  | | ||||| |  
TGTCATAGTCTCCTCAATCATCATCTTCCACACACCCGTCCAGCCCATCAATGCTCTTGGAGCTGCCATCGCAATCCTTGGAACTTTCTTGTATTCTCAGgtatttgctca-ttcccttcatgaattgaggatggtttattcagagctgtctgaaaaaataaatcaatatatactaataataaggaaaataatttgtttgt

upper sequence: LOC_Os08g08840.2 (Oryza sativa), 5'ss of exon 5
lower sequence: Vv10s0116g00760.t01 (Vitis vinifera), 5'ss of exon 4
TGTGATTGTTTCGTCAATCATTATCTTCCACACACCTGTCCGCCCTGTCAATGCACTAGGAGCTGCCATTGCCATCCTTGGCACATTCCTGTATTCTCAGgtaaattcttgctttgat-attttactttagccgtgcttgccctgtgtatacttcaaacaaactttcttttccctgcacgagaaggatgacattttgt-ata-
||| || || || || || || |||||||| |||||||| |  ||  ||||||| || |||||||||||||| |||||||| || || || ||||| |||||||||||||       | |||| | |||| | |  |          |||  ||   |  |   |  ||||    |  || | |  |  |    | || ||| 
TGTCATAGTCTCCTCCATAATCATCTTCCATACACCTGTTCAACCCATCAATGCCCTTGGAGCTGCCATTGCAATCCTTGGAACGTTTCTCTATTCGCAGgtaaattcttatccctttgatttgagtttaacagcacagaattctcttattatt---attattgtatttttttgggtgcggggaccaaaatgcctagtcataa

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86498017|gb|CI140650.1|CI140650
EST:     ATGCACTAGGAGCTGCCATTGCCATCCTTGGCACATTCCTGTATTCTCAG                         GCAAAGCAGTGAGTTCAAAAAGATGGTAATGTTCAGGGCCATGGATGAAGA
genomic: ATGCACTAGGAGCTGCCATTGCCATCCTTGGCACATTCCTGTATTCTCAGgtaaattctt ... tctgtttcagGCAAAGCAGTGAGTTCAAAAAGATGGTAATGTTCAGGGCCATGGATGAAGA
EST: gi|88505541|gb|CI433047.1|CI433047
EST:     ATGCACTAGGAGCTGCCATTGCCATCCTTGGCACATTCCTGTATTCTCAG                         GCAAAGCAGTGAGTTCAAAAAGATGGTAATGTTCAGGGCCATGGATGAAGA
genomic: ATGCACTAGGAGCTGCCATTGCCATCCTTGGCACATTCCTGTATTCTCAGgtaaattctt ... tctgtttcagGCAAAGCAGTGAGTTCAAAAAGATGGTAATGTTCAGGGCCATGGATGAAGA
EST: gi|88260261|gb|CI362554.1|CI362554
EST:     ATGCACTAGGAGCTGCCATTGCCATCCTTGGCACATTCCTGTATTCTCAG                         GCAAAGCAGTGAGTTCAAAAAGATGGTAATGTTCAGGGCCATGGATGAAGA
genomic: ATGCACTAGGAGCTGCCATTGCCATCCTTGGCACATTCCTGTATTCTCAGgtaaattctt ... tctgtttcagGCAAAGCAGTGAGTTCAAAAAGATGGTAATGTTCAGGGCCATGGATGAAGA
EST: gi|88831430|gb|CI083824.1|CI083824
EST:     ATGCACTAGGAGCTGCCATTGCCATCCTTGGCACATTCCTGTATTCTCAG                         GCAAAGCAATGAGTTCAAAAAGATGGTAATGTTCAGGGCCATGGATGAAGA
genomic: ATGCACTAGGAGCTGCCATTGCCATCCTTGGCACATTCCTGTATTCTCAGgtaaattctt ... tctgtttcagGCAAAGCAGTGAGTTCAAAAAGATGGTAATGTTCAGGGCCATGGATGAAGA
EST: gi|86832721|gb|CI345136.1|CI345136
EST:     ATGCACTAGGAGCTGCCATTGCCATCCTT-GCACATTCCTGTATTCTCAG                         GCAAAGCAGTGAGTTCAAAAAGATGGTAATGTTCAGGGCCATGGATGAAGA
genomic: ATGCACTAGGAGCTGCCATTGCCATCCTTGGCACATTCCTGTATTCTCAGgtaaattctt ... tctgtttcagGCAAAGCAGTGAGTTCAAAAAGATGGTAATGTTCAGGGCCATGGATGAAGA
EST: gi|88266166|gb|CI377068.1|CI377068
EST:     ATGCACTAGGAGCTGCCATTGCCATCCTTGGCACATTCCTGTATTCTCAG                         GCAAAGCAGTGAGTTCAAAAAGATGGTAATGTTCAGGGCCATGGATGAAGA
genomic: ATGCACTAGGAGCTGCCATTGCCATCCTTGGCACATTCCTGTATTCTCAGgtaaattctt ... tctgtttcagGCAAAGCAGTGAGTTCAAAAAGATGGTAATGTTCAGGGCCATGGATGAAGA
EST: gi|88481234|gb|CI418505.1|CI418505
EST:     ATGCACTAGGAGCTGCCATTGCCATCCTTGGCACATTCCTGTATTCTCAG                         GCAAAGCAGTGAGTTCAAAAAGATGGTAATGTTCAGGGCCATGGATGAAGA
genomic: ATGCACTAGGAGCTGCCATTGCCATCCTTGGCACATTCCTGTATTCTCAGgtaaattctt ... tctgtttcagGCAAAGCAGTGAGTTCAAAAAGATGGTAATGTTCAGGGCCATGGATGAAGA
EST: gi|88474434|gb|CI411705.1|CI411705
EST:     ATGCACTAGGAGCTGCCATTGCCATCCTTGGCACATTCCTGTATTCTCAG                         GCAAAGCAGTGAGTTCAAAAAGATGGTAATGTTCAGGGCCATGGATGAAGA
genomic: ATGCACTAGGAGCTGCCATTGCCATCCTTGGCACATTCCTGTATTCTCAGgtaaattctt ... tctgtttcagGCAAAGCAGTGAGTTCAAAAAGATGGTAATGTTCAGGGCCATGGATGAAGA
EST: gi|88838346|gb|CI373706.1|CI373706
EST:     ATGCACTAGGAGCTGCCATTGCCATCCTTGGCACATTCCTGTATTCTCAG                         GCAAAGCAGTGAGTTCAAAAAGATGGTAATGTTCAGGGCCATGGATGAAGA
genomic: ATGCACTAGGAGCTGCCATTGCCATCCTTGGCACATTCCTGTATTCTCAGgtaaattctt ... tctgtttcagGCAAAGCAGTGAGTTCAAAAAGATGGTAATGTTCAGGGCCATGGATGAAGA
EST: gi|88275658|gb|CI396262.1|CI396262
EST:     GCCATCCTTGGCACATTCCTGTATTCTCAG                         GCAAAGCAGTGAGTTCAAAAAGATGGTAATGTTCAGGGCCATGGATGAGGA
genomic: GCCATCCTTGGCACATTCCTGTATTCTCAGgtaaattctt ... tctgtttcagGCAAAGCAGTGAGTTCAAAAAGATGGTAATGTTCAGGGCCATGGATGAAGA
EST: gi|89182224|gb|CI113593.1|CI113593
EST:     ATGCACTAGGAGCTGCCATTGCCATCCTTGGCACATTCCTGTATTCTCAG                         GCGAAGCAGTGAGTTCAAAAAGATGGTAATGTTCAGGGCCATGGATGAAGA
genomic: ATGCACTAGGAGCTGCCATTGCCATCCTTGGCACATTCCTGTATTCTCAGgtaaattctt ... tctgtttcagGCAAAGCAGTGAGTTCAAAAAGATGGTAATGTTCAGGGCCATGGATGAAGA
EST: gi|88322445|gb|CI540413.1|CI540413
EST:     CCTTGGCACATTCCTGTATTCTCAG                         GCAAAGCAGTGAGTTCAAAAAGATGGTAATGTTCAGGGCCATGGATGAAGA
genomic: CCTTGGCACATTCCTGTATTCTCAGgtaaattctt ... tctgtttcagGCAAAGCAGTGAGTTCAAAAAGATGGTAATGTTCAGGGCCATGGATGAAGA
EST: gi|89183228|gb|CI045793.1|CI045793
EST:     ATGCACTAGGAGCTGCCATTGCCATCCTTGGCACATTCCTGTATTCTCAG                         GCAAAGCAGTGAGTTCAAAAAGATGGTAATGTTCAGGGCCATGGATGAAGA
genomic: ATGCACTAGGAGCTGCCATTGCCATCCTTGGCACATTCCTGTATTCTCAGgtaaattctt ... tctgtttcagGCAAAGCAGTGAGTTCAAAAAGATGGTAATGTTCAGGGCCATGGATGAAGA
EST: gi|88491139|gb|CI428411.1|CI428411
EST:     ATGCACTAGGAGCTGCCATTGCCATCCTTGGCACATTCCTGTATTCTCAG                         GCAAAGCAGTGAGTTCAAAAAGATGGTAATGTTCAGGGCCATGGATGAAGA
genomic: ATGCACTAGGAGCTGCCATTGCCATCCTTGGCACATTCCTGTATTCTCAGgtaaattctt ... tctgtttcagGCAAAGCAGTGAGTTCAAAAAGATGGTAATGTTCAGGGCCATGGATGAAGA
EST: gi|88297904|gb|CI555919.1|CI555919
EST:     ATGCACTAGGAGCTGCCATTGCCATCCTTGGCACATTCCTGTATTCTCAG                         GCAAAGCAGTGAGTTCAAAAAGATGGTAATGTTCAGGGCCATGGATGAAGA
genomic: ATGCACTAGGAGCTGCCATTGCCATCCTTGGCACATTCCTGTATTCTCAGgtaaattctt ... tctgtttcagGCAAAGCAGTGAGTTCAAAAAGATGGTAATGTTCAGGGCCATGGATGAAGA
EST: gi|88844498|gb|CI020345.1|CI020345
EST:     ATGCACTAGGAGCTGCCATTGCCATCCTTGGCACATTCCTGTATTCTCAG                         GCAAAGCAGTGAGTTCAAAAAGATGGTAATGTTCAGGGCCATGGATGAAGA
genomic: ATGCACTAGGAGCTGCCATTGCCATCCTTGGCACATTCCTGTATTCTCAGgtaaattctt ... tctgtttcagGCAAAGCAGTGAGTTCAAAAAGATGGTAATGTTCAGGGCCATGGATGAAGA
EST: gi|88254287|gb|CI352913.1|CI352913
EST:     ATGCACTAGGAGCTGCCATTGCCATCCTTGGCACATTCCTGTATTCTCAG                         GCAAAGCAGTGAGTTCAAAAAGATGGTAATGTTCAGGGCCATGGATGAAGA
genomic: ATGCACTAGGAGCTGCCATTGCCATCCTTGGCACATTCCTGTATTCTCAGgtaaattctt ... tctgtttcagGCAAAGCAGTGAGTTCAAAAAGATGGTAATGTTCAGGGCCATGGATGAAGA
EST: gi|86435296|gb|CI106529.1|CI106529
EST:     ATGCACTAGGAGCTGCCATTGCCATCCTTGGCACATTCCTGTATTCTCAG                         GCAAAGCAGTGAGTTCAAAAAGATGGTAATGTTCAGGGCCATGGATGAAGA
genomic: ATGCACTAGGAGCTGCCATTGCCATCCTTGGCACATTCCTGTATTCTCAGgtaaattctt ... tctgtttcagGCAAAGCAGTGAGTTCAAAAAGATGGTAATGTTCAGGGCCATGGATGAAGA
EST: gi|88323939|gb|CI561348.1|CI561348
EST:     CTTGGCACATTCCTGTATTCTCAG                         GCAAAGCAGTGAGTTCAAAAAGATGGTAATGTTCAGGGCCATGGATGAAGA
genomic: CTTGGCACATTCCTGTATTCTCAGgtaaattctt ... tctgtttcagGCAAAGCAGTGAGTTCAAAAAGATGGTAATGTTCAGGGCCATGGATGAAGA
EST: gi|88845221|gb|CI084146.1|CI084146
EST:     ATGCACTAGGAGCTGCCATTGCCATCCTTGGCACATTCCTGTATTCTCAG                         GCAAAGCAGTGAGTTCAAAAAGATGGTAATGTTCAGGGCCATGGATGAAGA
genomic: ATGCACTAGGAGCTGCCATTGCCATCCTTGGCACATTCCTGTATTCTCAGgtaaattctt ... tctgtttcagGCAAAGCAGTGAGTTCAAAAAGATGGTAATGTTCAGGGCCATGGATGAAGA
EST: gi|88507217|gb|CI434723.1|CI434723
EST:     ATGCACTAGGAGCTGCCATTGCCATCCTTGGCACATTCCTGTATTCTCAG                         GCAAAGCAGTGAGTTCAAAAAGATGGTAATGTTCAGGGCCATGGATGAAGA
genomic: ATGCACTAGGAGCTGCCATTGCCATCCTTGGCACATTCCTGTATTCTCAGgtaaattctt ... tctgtttcagGCAAAGCAGTGAGTTCAAAAAGATGGTAATGTTCAGGGCCATGGATGAAGA
EST: gi|89167940|gb|CI109144.1|CI109144
EST:     ATGCACTAGGAGCTGCCATTGCCATCCTTGGCACATTCCTGTATTCTCAG                         GCAAAGCAGTGAGTTCAAAAAGATGGTAATGTTCAGGGCCATGGATGAAGA
genomic: ATGCACTAGGAGCTGCCATTGCCATCCTTGGCACATTCCTGTATTCTCAGgtaaattctt ... tctgtttcagGCAAAGCAGTGAGTTCAAAAAGATGGTAATGTTCAGGGCCATGGATGAAGA
EST: gi|86253198|gb|CI058123.1|CI058123
EST:     ATGCACTAGGAGCTGCCATTGCCATCCTTGGCACATTCCTGTATTCTCAG                         GCAAAGCAGTGAGTTCAAAAAGATGGTAATGTTCAGGGCCATGGATGAAGA
genomic: ATGCACTAGGAGCTGCCATTGCCATCCTTGGCACATTCCTGTATTCTCAGgtaaattctt ... tctgtttcagGCAAAGCAGTGAGTTCAAAAAGATGGTAATGTTCAGGGCCATGGATGAAGA
EST: gi|86433436|gb|CI093779.1|CI093779
EST:     ATGCACTAGGAGCTGCCATTGCCATCCTTGGCACATTCCTGTATTCTCAG                         GCAAAGCAGTGAGTTCAAAAAGATGGTAATGTTCAGGGCCATGGATGAAGA
genomic: ATGCACTAGGAGCTGCCATTGCCATCCTTGGCACATTCCTGTATTCTCAGgtaaattctt ... tctgtttcagGCAAAGCAGTGAGTTCAAAAAGATGGTAATGTTCAGGGCCATGGATGAAGA
EST: gi|88468056|gb|CI517515.1|CI517515
EST:     ATGCACTAGGAGCTGCCATTGCCATCCTTGGCACATTCCTGTATTCTCAG                         GCAAAGCAGTGAGTTCAAAAAGATGGTAATGTTCAGGGCCATGGATGAAGA
genomic: ATGCACTAGGAGCTGCCATTGCCATCCTTGGCACATTCCTGTATTCTCAGgtaaattctt ... tctgtttcagGCAAAGCAGTGAGTTCAAAAAGATGGTAATGTTCAGGGCCATGGATGAAGA
EST: gi|88971658|gb|CI388902.1|CI388902
EST:     ATGCACTAGGAGCTGCCATTCCCATCCTTGGCACATTCCTGTATTCTCAG                         GCAAAGCAGTGAGTTCAAAAAGATGGTAATGTTCAGGGCCATGGATGAAGA
genomic: ATGCACTAGGAGCTGCCATTGCCATCCTTGGCACATTCCTGTATTCTCAGgtaaattctt ... tctgtttcagGCAAAGCAGTGAGTTCAAAAAGATGGTAATGTTCAGGGCCATGGATGAAGA
EST: gi|88516368|gb|CI444022.1|CI444022
EST:     ATGCACTAGGAGCTGCCATTGCCATCCTTGGCACATTCCTGTATTCTCAG                         GCAAAGCAGTGAGTTCAAAAAGATGGTAATGTTCAGGGCCATGGATGAAGA
genomic: ATGCACTAGGAGCTGCCATTGCCATCCTTGGCACATTCCTGTATTCTCAGgtaaattctt ... tctgtttcagGCAAAGCAGTGAGTTCAAAAAGATGGTAATGTTCAGGGCCATGGATGAAGA
EST: gi|58590139|gb|CF988447.1|CF988447
EST:     ATGCACTAGGAGCTGCCATTGCCATCCTTGGCACATTCCTGTATTCTCAG                         GCAAAGCAGTGAGTT
genomic: ATGCACTAGGAGCTGCCATTGCCATCCTTGGCACATTCCTGTATTCTCAGgtaaattctt ... tctgtttcagGCAAAGCAGTGAGTT
EST: gi|89195678|gb|CI393707.1|CI393707
EST:     ATGCACTAGGAGCTGCCATTGCCATCCTTGGCACATTCCTGTATTCTCAG                         GCAAAGCAGTGAGTTCAAAAAGATGGTAATGTTCAGGGCCATGGATGAAGA
genomic: ATGCACTAGGAGCTGCCATTGCCATCCTTGGCACATTCCTGTATTCTCAGgtaaattctt ... tctgtttcagGCAAAGCAGTGAGTTCAAAAAGATGGTAATGTTCAGGGCCATGGATGAAGA
EST: gi|88847174|gb|CI001446.1|CI001446
EST:     ATGCACTAGGAGCTGCCATTGCCATCCTTGGCACATTCCTGTATTCTCAG                         GCAAAGCAGTGAGTTCAAAAAGATGGTAATGTTCAGGGCCATGGATGAAGA
genomic: ATGCACTAGGAGCTGCCATTGCCATCCTTGGCACATTCCTGTATTCTCAGgtaaattctt ... tctgtttcagGCAAAGCAGTGAGTTCAAAAAGATGGTAATGTTCAGGGCCATGGATGAAGA
EST: gi|88219844|gb|CI219404.1|CI219404
EST:     ATGCACTAGGAGCTGCCATTGCCATCCTTGGCACATTCCTGTATTCTCAG                         GCAAAGCAGTGAGTTCAAAAAGATGGTAATGTTCAGGGCCATGGATGAAGA
genomic: ATGCACTAGGAGCTGCCATTGCCATCCTTGGCACATTCCTGTATTCTCAGgtaaattctt ... tctgtttcagGCAAAGCAGTGAGTTCAAAAAGATGGTAATGTTCAGGGCCATGGATGAAGA
EST: gi|87024623|gb|CI259338.1|CI259338
EST:     ATGCACTAGGAGCTGCCATTGCCATCCTTGGCACATTCCTGTATTCTCAG                         GCAAACCAGTGAGTTCAAAAAGATGGTAATGTTCAGGGCCATGGATGAAGA
genomic: ATGCACTAGGAGCTGCCATTGCCATCCTTGGCACATTCCTGTATTCTCAGgtaaattctt ... tctgtttcagGCAAAGCAGTGAGTTCAAAAAGATGGTAATGTTCAGGGCCATGGATGAAGA
EST: gi|86837175|gb|CI347669.1|CI347669
EST:     ATGCACTAGGAGCTGCCATTGCCATCCTTGGCACATTCCTGTATTCTCAG                         GCAAAGCAGTGAGTTCAAAAAGATGGTAATGTTCAGGGCCATGGATGAAGA
genomic: ATGCACTAGGAGCTGCCATTGCCATCCTTGGCACATTCCTGTATTCTCAGgtaaattctt ... tctgtttcagGCAAAGCAGTGAGTTCAAAAAGATGGTAATGTTCAGGGCCATGGATGAAGA
EST: gi|88298012|gb|CI556027.1|CI556027
EST:     ATGCACTAGGAGCTGCCATTGCCATCCTTGGCACATTCCTGTATTCTCAG                         GCAAAGCAGTGAGTTCAAAAAGATGGTAATGTTCAGGGCCATGGATGAAGA
genomic: ATGCACTAGGAGCTGCCATTGCCATCCTTGGCACATTCCTGTATTCTCAGgtaaattctt ... tctgtttcagGCAAAGCAGTGAGTTCAAAAAGATGGTAATGTTCAGGGCCATGGATGAAGA
EST: gi|88529854|gb|CI458209.1|CI458209
EST:     ATGCACTAGGAGCTGCCATTGCCATCCTTGGCACATTCCTGTATTCTCAG                         GCAAAGCAGTGAGTTCAAAAAGATGGTAATGTTCAGGGCCATGGATGAAGA
genomic: ATGCACTAGGAGCTGCCATTGCCATCCTTGGCACATTCCTGTATTCTCAGgtaaattctt ... tctgtttcagGCAAAGCAGTGAGTTCAAAAAGATGGTAATGTTCAGGGCCATGGATGAAGA
EST: gi|88274170|gb|CI394576.1|CI394576
EST:     ATGCACTAGGAGCTGCCATTGCCATCCTTGGCACATTCCTGTATTCTCAG                         GC-AAGCAGTGAGTTCAAAAAGATGGTAATGTTCAGGGCCATGGATGAAGA
genomic: ATGCACTAGGAGCTGCCATTGCCATCCTTGGCACATTCCTGTATTCTCAGgtaaattctt ... tctgtttcagGCAAAGCAGTGAGTTCAAAAAGATGGTAATGTTCAGGGCCATGGATGAAGA
EST: gi|86500797|gb|CI143430.1|CI143430
EST:     ATGCACTAGGAGCTGCCATTGCCATCCTTGGCACATTCCTGTATTCTCAG                         GCAAAGCAGTGAGTTCAAAAAGATGGTAATGTTCAGGGCCATGGATGAAGA
genomic: ATGCACTAGGAGCTGCCATTGCCATCCTTGGCACATTCCTGTATTCTCAGgtaaattctt ... tctgtttcagGCAAAGCAGTGAGTTCAAAAAGATGGTAATGTTCAGGGCCATGGATGAAGA
EST: gi|218494424|gb|FG970087.1|FG970087
EST:     ATGCACTAGGAGCTGCCATTGCCATCCTTGGCACATTCCTGTATTCTCAG                         GCAAAGCAGTGAGTTCAAAAAGATGGTAATGTTCAGGGCCATGGATGAAGA
genomic: ATGCACTAGGAGCTGCCATTGCCATCCTTGGCACATTCCTGTATTCTCAGgtaaattctt ... tctgtttcagGCAAAGCAGTGAGTTCAAAAAGATGGTAATGTTCAGGGCCATGGATGAAGA
EST: gi|88374854|gb|CI520920.1|CI520920
EST:     ATGCAGTAGGAGCTGCCATTGCCATCCTTGGCACATTCCTGTATTCTCAG                         GCAAAGCAGTGAGTTCAAAAAGATGGTAATGTTCAGGGCCATGGATGAAGA
genomic: ATGCACTAGGAGCTGCCATTGCCATCCTTGGCACATTCCTGTATTCTCAGgtaaattctt ... tctgtttcagGCAAAGCAGTGAGTTCAAAAAGATGGTAATGTTCAGGGCCATGGATGAAGA
EST: gi|218497737|gb|FG963955.1|FG963955
EST:     ATGCACTAGGAGCTGCCATTGCCATCCTTGGCACATTCCTGTATTCTCAG                         GCAAAGCAGTGAGTTCAAAAAGATGGTAATGTTCAGGGCCATGGATGAAGA
genomic: ATGCACTAGGAGCTGCCATTGCCATCCTTGGCACATTCCTGTATTCTCAGgtaaattctt ... tctgtttcagGCAAAGCAGTGAGTTCAAAAAGATGGTAATGTTCAGGGCCATGGATGAAGA
EST: gi|88282917|gb|CI402117.1|CI402117
EST:     ATGCACTAGGAGCTGCCATTGCCATCCTTGGCACATTCCTGTATTCTCAG                         GCAAAGCAGTGAGTTCAAAAAGATGGTAATGTTCAGGGCCATGGATGAAGA
genomic: ATGCACTAGGAGCTGCCATTGCCATCCTTGGCACATTCCTGTATTCTCAGgtaaattctt ... tctgtttcagGCAAAGCAGTGAGTTCAAAAAGATGGTAATGTTCAGGGCCATGGATGAAGA
EST: gi|89169288|gb|CI038297.1|CI038297
EST:     ATGCACTAGGAGCTGCCATTGCCATCCTTGGCACATTCCTGTATTCTCAG                         GCAAAGCAGTGAGTTCAAAAAGATGGTAATGTTCAGGGCCATGGATGAAGA
genomic: ATGCACTAGGAGCTGCCATTGCCATCCTTGGCACATTCCTGTATTCTCAGgtaaattctt ... tctgtttcagGCAAAGCAGTGAGTTCAAAAAGATGGTAATGTTCAGGGCCATGGATGAAGA
EST: gi|88266988|gb|CI378923.1|CI378923
EST:     ATGCACTAGGAGCTGCCATTGCCATCCTTGGCACATTCCTGTATTCTCAG                         GCAAAGCAGTGAGTTCAAAAAGATGGTAATGTTCAGGGCCATGGATGAAGA
genomic: ATGCACTAGGAGCTGCCATTGCCATCCTTGGCACATTCCTGTATTCTCAGgtaaattctt ... tctgtttcagGCAAAGCAGTGAGTTCAAAAAGATGGTAATGTTCAGGGCCATGGATGAAGA
EST: gi|88275975|gb|CI396579.1|CI396579
EST:     ATGCACTAGGAGCTGCCATTGCCATCCTTGGCACATTCCTTTATTCTCAG                         GCAAAGCAGTGAGTTCAAAAAGATGGTAATGTTCAGGGCCATGGATGAAGA
genomic: ATGCACTAGGAGCTGCCATTGCCATCCTTGGCACATTCCTGTATTCTCAGgtaaattctt ... tctgtttcagGCAAAGCAGTGAGTTCAAAAAGATGGTAATGTTCAGGGCCATGGATGAAGA
EST: gi|88450190|gb|CI541951.1|CI541951
EST:     AGCTGCCATTGCCATCCTTGGCACATTCCTGTATTCTCAG                         GCAAAGCAGTGAGTTCAAAAAGATGGTAATGTTCAGGGCCATGGATGAAGA
genomic: AGCTGCCATTGCCATCCTTGGCACATTCCTGTATTCTCAGgtaaattctt ... tctgtttcagGCAAAGCAGTGAGTTCAAAAAGATGGTAATGTTCAGGGCCATGGATGAAGA
EST: gi|88840622|gb|CI080076.1|CI080076
EST:     ATGCACTAGGAGCTGCCATTGCCATCCTTGGCACATTCCTGTATTCTCAG                         GCAAAGCAGTGAGTTCAAAAAGATGGTAATGTTCAGGGCCATGGATGAAGA
genomic: ATGCACTAGGAGCTGCCATTGCCATCCTTGGCACATTCCTGTATTCTCAGgtaaattctt ... tctgtttcagGCAAAGCAGTGAGTTCAAAAAGATGGTAATGTTCAGGGCCATGGATGAAGA
EST: gi|86430388|gb|CI082811.1|CI082811
EST:     ATGCACTAGGAGCTGCCATTGCCATCCTTGGCACATTCCTGTATTCTCAG                         GCAAAGCAGTGAGTTCAAAAAGATGGTAATGTTCAGGGCCATGGATGAAGA
genomic: ATGCACTAGGAGCTGCCATTGCCATCCTTGGCACATTCCTGTATTCTCAGgtaaattctt ... tctgtttcagGCAAAGCAGTGAGTTCAAAAAGATGGTAATGTTCAGGGCCATGGATGAAGA
EST: gi|88842335|gb|CI081591.1|CI081591
EST:     ATGCACTAGGAGCTGCCATTGCCATCCTTGGCACATTCCTGTATTCTCAG                         GCAAAGCAGTGAGTTCAAAAAGATGGTAATGTTCAGGGCCATGGATGAAGA
genomic: ATGCACTAGGAGCTGCCATTGCCATCCTTGGCACATTCCTGTATTCTCAGgtaaattctt ... tctgtttcagGCAAAGCAGTGAGTTCAAAAAGATGGTAATGTTCAGGGCCATGGATGAAGA
EST: gi|86435464|gb|CI106697.1|CI106697
EST:     ATGCACTAGGAGCTGCCATTGCCATCCTTGGCACATTCCTGTATTCTCAG                         GCAAAGCAGTGAGTTCAAAAAGATGGTAATGTTCAGGGCCATGGATGAAGA
genomic: ATGCACTAGGAGCTGCCATTGCCATCCTTGGCACATTCCTGTATTCTCAGgtaaattctt ... tctgtttcagGCAAAGCAGTGAGTTCAAAAAGATGGTAATGTTCAGGGCCATGGATGAAGA
EST: gi|88476478|gb|CI413749.1|CI413749
EST:     ATGCACTAGGAGCTGCCATTGCCATCCTTGGCACATTCCTGTATTCTCAG                         GCAAAGCAGTGAGTTCAAAAAGATGGTAATGTTCAGGGCCATGGATGAAGA
genomic: ATGCACTAGGAGCTGCCATTGCCATCCTTGGCACATTCCTGTATTCTCAGgtaaattctt ... tctgtttcagGCAAAGCAGTGAGTTCAAAAAGATGGTAATGTTCAGGGCCATGGATGAAGA
EST: gi|58670578|gb|CK059264.1|CK059264
EST:     ATGCACTAGGAGCTGCCATTGCCATCCTTGGCACATTCCTGTATTCTCAG                         GCAAAGCAGTGAGTTCAAAAAGATGGTAATGTTCAGGGCCATGGATGAAGA
genomic: ATGCACTAGGAGCTGCCATTGCCATCCTTGGCACATTCCTGTATTCTCAGgtaaattctt ... tctgtttcagGCAAAGCAGTGAGTTCAAAAAGATGGTAATGTTCAGGGCCATGGATGAAGA
EST: gi|88434843|gb|CI549040.1|CI549040
EST:     ATGCACTAGGAGCTGCCATTGCCATCCTTGGCACATTCCTGTATTCTCAG                         GCAAAGCAGTGAGTTCAAAAAGATGGTAATGTTCAGGGCCATGGATGAAGA
genomic: ATGCACTAGGAGCTGCCATTGCCATCCTTGGCACATTCCTGTATTCTCAGgtaaattctt ... tctgtttcagGCAAAGCAGTGAGTTCAAAAAGATGGTAATGTTCAGGGCCATGGATGAAGA
EST: gi|88253065|gb|CI351691.1|CI351691
EST:     ATGCACTAGGAGCTGCCATTGCCATCCTTGGCACATTCCTGTATTCTCAG                         GCAAAGCAGTGAGTTCAAAAAGATGGTAATGTTCAGGGCCATGGATGAAGA
genomic: ATGCACTAGGAGCTGCCATTGCCATCCTTGGCACATTCCTGTATTCTCAGgtaaattctt ... tctgtttcagGCAAAGCAGTGAGTTCAAAAAGATGGTAATGTTCAGGGCCATGGATGAAGA
EST: gi|89168008|gb|CI109212.1|CI109212
EST:     ATGCACTAGGAGCTGCCATTGCCATCCTTGGCACATTCCTGTATTCTCAG                         GCAAAGCAGTGAGTTCAAAAAGATGGTAATGTTCAGGGCCATGGATGAAGA
genomic: ATGCACTAGGAGCTGCCATTGCCATCCTTGGCACATTCCTGTATTCTCAGgtaaattctt ... tctgtttcagGCAAAGCAGTGAGTTCAAAAAGATGGTAATGTTCAGGGCCATGGATGAAGA
EST: gi|88429365|gb|CI557097.1|CI557097
EST:     GCACTAGGAGCTGCCATTGCCATCCTTGGCACATTCCTGTATTCTCAG                         GCAAAGCAGTGAGTTCAAAAAGATGGTAATGTTCAGGGCCATGGATGAAGA
genomic: GCACTAGGAGCTGCCATTGCCATCCTTGGCACATTCCTGTATTCTCAGgtaaattctt ... tctgtttcagGCAAAGCAGTGAGTTCAAAAAGATGGTAATGTTCAGGGCCATGGATGAAGA
EST: gi|89181479|gb|CI112985.1|CI112985
EST:     ATGCACTAGGAGCTGCCATTGCCATCCTTGGCACATTCCTGTATTCTCAG                         GCAAAGCAGTGAGTTCAAAAAGATGGTAATGTTCAGGGCCATGGATGAAGA
genomic: ATGCACTAGGAGCTGCCATTGCCATCCTTGGCACATTCCTGTATTCTCAGgtaaattctt ... tctgtttcagGCAAAGCAGTGAGTTCAAAAAGATGGTAATGTTCAGGGCCATGGATGAAGA
EST: gi|88296801|gb|CI540153.1|CI540153
EST:     ATGCACTAGGAGCTGCCATTGCCATCCTTGGCACATTCCTGTATTCTCAG                         GCAAAGCAGTGAGTTCAAAAAGATGGTAATGTTCAGGGCCATGGATGAAGA
genomic: ATGCACTAGGAGCTGCCATTGCCATCCTTGGCACATTCCTGTATTCTCAGgtaaattctt ... tctgtttcagGCAAAGCAGTGAGTTCAAAAAGATGGTAATGTTCAGGGCCATGGATGAAGA
EST: gi|88273116|gb|CI388572.1|CI388572
EST:     ATGCACTAGGAGCTGCCATTGCCATCCTT-GCACATTCCTGTATTCTCAG                         GCAAAGCAGTGAGTTCAAAAAGATGGTAATGTTCAGGGCCATGGATGAAGA
genomic: ATGCACTAGGAGCTGCCATTGCCATCCTTGGCACATTCCTGTATTCTCAGgtaaattctt ... tctgtttcagGCAAAGCAGTGAGTTCAAAAAGATGGTAATGTTCAGGGCCATGGATGAAGA
EST: gi|88274610|gb|CI395016.1|CI395016
EST:     ATGCACTAGGAGCTGCCATTGCCATCCTTGGCACATTCCTGTATTCTCAG                         GCAAAGCAGTGAGTTCAAAAAGATGGTAATGTTCAGGGCCATGGATGAAGA
genomic: ATGCACTAGGAGCTGCCATTGCCATCCTTGGCACATTCCTGTATTCTCAGgtaaattctt ... tctgtttcagGCAAAGCAGTGAGTTCAAAAAGATGGTAATGTTCAGGGCCATGGATGAAGA
EST: gi|88837113|gb|CI078473.1|CI078473
EST:     ATGCACTAGGAGCTGCCATTGCCATCCTTGGCACATTCCTGTATTCTCAG                         GCAAAGCAGTGAGTTCAAAAAGATGGTAATGTTCAGGGCCATGGATGAAGA
genomic: ATGCACTAGGAGCTGCCATTGCCATCCTTGGCACATTCCTGTATTCTCAGgtaaattctt ... tctgtttcagGCAAAGCAGTGAGTTCAAAAAGATGGTAATGTTCAGGGCCATGGATGAAGA
EST: gi|88958861|gb|CI381664.1|CI381664
EST:     ATTCACTAGGAGCTGCCATTGCCATCCTTGGCACATTCCTGTATTCTCAG                         GCAAAGCAGTGAGTTCAAAAAGATGGTAATGTTCAGGGCCATGGATGAAGA
genomic: ATGCACTAGGAGCTGCCATTGCCATCCTTGGCACATTCCTGTATTCTCAGgtaaattctt ... tctgtttcagGCAAAGCAGTGAGTTCAAAAAGATGGTAATGTTCAGGGCCATGGATGAAGA
EST: gi|88297885|gb|CI555900.1|CI555900
EST:     ATGCACTAGGAGCTGCCATTGCCATCCTTGGCACATTCCTGTATTCTCAG                         GCAAAGCAGTGAGTTCAAAAAGATGGTAATGTTCAGGGCCATGGATGAAGA
genomic: ATGCACTAGGAGCTGCCATTGCCATCCTTGGCACATTCCTGTATTCTCAGgtaaattctt ... tctgtttcagGCAAAGCAGTGAGTTCAAAAAGATGGTAATGTTCAGGGCCATGGATGAAGA
EST: gi|86493864|gb|CI136497.1|CI136497
EST:     ATGCACTAGGAGCTGCCATTGCCATCCTTGGCACATTCCTGTATTCTCAG                         GCAAAGCAGTGAGTTCAAAAAGATGGTAATGTTCAGGGCCATGGATGAAGA
genomic: ATGCACTAGGAGCTGCCATTGCCATCCTTGGCACATTCCTGTATTCTCAGgtaaattctt ... tctgtttcagGCAAAGCAGTGAGTTCAAAAAGATGGTAATGTTCAGGGCCATGGATGAAGA

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 75 (upstream exon), 75 (downstream exon)
Score: 187

TGTGATTGTTTCGTCAATCATTATCTTCCACACACCTGTCCGCCCTGTCAATGCACTAGGAGCTGCCATTGCCATCCTTGGCACATTCCTGTATTCTCAGgtaaattctt ... tctgtttcagGCAAAGCAGTGAGTTCAAAAAGATGGTAATGTTCAGGGCCATGGATGAAGAAGGGATCCAGATGAAGAATGTCTCTGCCAAACCAGTAGCAAGCACTGAG




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Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
TGTGATTGTTTCGTCAATCATTATCTTCCACACACCTGTCCGCCCTGTCAATGCACTAGGAGCTGCCATTGCCATCCTTGGCACATTCCTGTATTCTCAGgtaaattcttgctttgatattttactttagccgtgcttgccctgtgtatacttcaaacaaactttcttttccctgcacgagaaggatgacattttgtata

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaacaaa